Spongiibacter taiwanensis: NCG89_02310
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Entry
NCG89_02310 CDS
T08367
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03410
Base excision repair
staw03430
Mismatch repair
staw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCG89_02310 (recJ)
03430 Mismatch repair
NCG89_02310 (recJ)
03440 Homologous recombination
NCG89_02310 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
staw03400
]
NCG89_02310 (recJ)
DNA repair and recombination proteins [BR:
staw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NCG89_02310 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NCG89_02310 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCG89_02310 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
DUF2065
Motif
Other DBs
NCBI-ProteinID:
USA43630
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All DBs
Position
complement(465664..467397)
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AA seq
577 aa
AA seq
DB search
MPFPRIVLRERRAEEGPAPEFPQLPDLLTRLYHNRGLRRAQELSLGLDALPAPTMKGLDV
AVELLVAAIAGNKRLLIVGDFDCDGATSTTLAMLGLTALGARQVDFLVPNRFEYGYGLSP
EIVAVAAERQPDLIITVDNGISSIDGVEAARALGIPVLVTDHHLPGDELPKAAAIVNPNQ
PGCEFPDKALAGVGVMFYLLLALRSKLREQGAFVDRSAPNLAEFLDIVALGTVADVVPLS
HANRILVEQGLRRIRAGRCRPGISALLKVSGRDAGRLVASDLGFTVGPRLNAAGRLDDMT
IGIRCLLEEDPNRALNLAAELDDLNRERRSIEQSMKDEAFRALSHLHLEGADLPAGLCLF
EPSWHQGVVGILASRVKEQFHRPVIAFAETSNDEIKGSARSIPGLHMRDALDLIAKRHPQ
LLRKFGGHAMAAGLSLARKDFDTFRQAFADTVAELVSEDDLEAVVHSDGELSQASLTLEN
AELLRNAGPWGQAFPAPVFHGRFRIQQQRLVGEKHLKMVLLPEATDAPLIDAIAFNIDTA
VWPDTGVELVELVYKLDSNLWRENLSLQLLVDHLRAV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgccatttcctcgcattgtcctgcgtgagcgtcgggccgaagagggtccggcgccagaa
ttcccccaactgcccgatctgctgacccgcctgtaccacaatcgggggttgcgccgcgct
caagagttgtcgctgggtctggatgccttacccgcgccgaccatgaagggcctggacgtg
gcggtggaattgttggtagcggccattgctggcaataagcgcctactgatcgttggcgac
ttcgactgcgacggcgcaaccagcaccaccctggccatgctgggtctgaccgcactgggt
gctcgccaggtcgacttcctggttcccaatcgtttcgagtatggctacggccttagcccc
gagatagtcgccgtggccgccgagcgccaacccgatctgattatcaccgtggataacggt
atttccagtatcgacggggttgaggcggcgagggcgctggggattccggtattggtgacc
gatcaccatttgcccggcgatgagttgcccaaggctgccgcgattgtgaatcccaaccag
cccggctgcgagtttccggataaagccctggcaggggtgggggtgatgttttatctgctg
ctggccctgcggagcaagctgcgagagcagggcgcctttgtcgatcgctcggcaccgaat
ctggccgagtttctcgatattgttgctctgggcacagtggctgatgtggtgcccctcagt
catgccaaccgcattctggttgagcagggcctgcgccggattcgggcggggcgctgtcgc
cccggcatctccgcgctgttgaaggtctcgggccgcgacgccggccgtctggtggccagc
gatctgggctttaccgtgggaccgcgcctcaacgccgcggggcgcctcgatgatatgacc
atcggcatccgctgcctgttggaagaggatcccaatcgagccctgaacctggcggccgag
ctggatgacctcaaccgggagcggcgcagcattgagcagagtatgaaggacgaggccttt
cgggccctgtcccatctgcacctagagggcgccgatctgcccgcgggtttgtgtctgttc
gaaccctcctggcatcagggtgtggtggggatactggcctcccgggtcaaggaacaattc
caccgcccggtgattgcctttgccgaaaccagcaatgacgaaatcaaggggtcggcccgg
tccatccccggtctgcatatgcgcgatgccctggatttgatcgccaagcgccacccccaa
ctgctgcgcaaattcggcggtcacgccatggcggcggggctcagtctggcgcgcaaagac
tttgacacctttcgccaggcctttgctgataccgtggccgagctggtcagtgaggacgac
ctggaagcggtggtccacagtgatggcgaactgagccaggccagcctgaccctggaaaat
gccgagctgctgcgcaatgccgggccctgggggcaggccttccccgcgccggtctttcat
ggccgcttccgcattcagcagcaacgtctggtcggcgaaaaacacctgaaaatggtgctg
ctgcccgaagccactgatgcgcccctcatagatgccatcgcttttaacatcgataccgca
gtctggcctgatactggcgtggagttggtggagctggtctataagctggatagcaacctg
tggcgggaaaatttgtcgctgcagctgttggtggatcatttacgggcggtttga
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