Spongiibacter taiwanensis: NCG89_05375
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Entry
NCG89_05375 CDS
T08367
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NCG89_05375 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
staw03400
]
NCG89_05375 (sbcB)
Enzymes [BR:
staw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NCG89_05375 (sbcB)
DNA repair and recombination proteins [BR:
staw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NCG89_05375 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCG89_05375 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCG89_05375 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
USA44211
LinkDB
All DBs
Position
complement(1147362..1148792)
Genome browser
AA seq
476 aa
AA seq
DB search
MNTFYWHDYETWGANPAVDRPVQFAGVRTDMDLNIVGDPLMIFSRPSPDFLPHPDACLIT
GITPQQALEEGVCEAEFIAAIHRELARPGTCGAGYNSIRFDDEVTRYTLYRNFYDPYARE
WQNGNSRWDLIDVVRLCGALRPEGIHWPVREDGSPSYKLETLSAANGLLHEAAHDALSDV
YATIELAKLLKQRQPKLFDYALTLRDKKVVASLLDCQAQVPVFHVSGRLPAARYCSALVM
PLAPHPSNKNSVIVYDLSVDPGPMLAMSAEEVSQRVFTAADDLPEGEERIPLKEIHINRS
PVVATARLLDEQSSARVGIDLDQCRTHWKQIRRTEGLTAKVQKVFAGRRFDGANDPDSDL
YGGFFSDSDRKLMDALRRESPDALARKAFDFHDARLPELFWRYRARNFPETLGAEELAQW
REFCRQRLRHPEGGQLGFDGFRARLFELSSASLSDHQRHILDELNDYAEALELEGL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaataccttctactggcacgactacgaaacctggggcgccaatcccgctgtggatcgg
ccggtgcagtttgccggtgtgcgtaccgacatggacctgaatatcgtcggcgacccgctg
atgatattcagtcgccccagccccgattttttaccccatcccgatgcctgcctgatcacc
gggattactccccagcaagccctggaagaaggggtgtgcgaggcggaatttattgctgct
atccaccgggagctggctcggcccggcacctgcggggctggctataacagcattcgcttt
gacgacgaagtcacccgctacactctctaccgcaacttttatgacccctacgcccgggag
tggcagaacggcaattcccgctgggacctgatcgacgtggtgcgtttgtgcggcgccctg
cggccggagggtattcactggccggttcgagaagacggcagccccagctacaagctggaa
accctcagtgcggccaacggcctgttacacgaggccgctcacgatgcgctgtctgatgtg
tatgccaccattgagttggcgaagttactcaagcagcgccagcccaagctgtttgattac
gccctgaccctgcgcgataaaaaggtggtggcgagcctgctcgattgccaggcccaggtg
ccggtgtttcatgtgtctggtcgcctgcctgcagcgcgctactgttcggcgctggtaatg
ccactggcgccgcacccgagcaacaagaacagcgtgatagtgtacgacctgagtgtggac
ccagggccgatgctggccatgtcagccgaggaggtcagtcagcgggtgttcactgctgcc
gacgacctgccggagggagaggagcgtatcccgctgaaggaaatccatattaatcgctca
cccgtcgtcgccaccgcccggctgctggatgaacaaagcagcgcccgggtgggcatcgat
ctcgatcagtgccgaacgcactggaaacagatccgccgcaccgaagggctcaccgccaag
gtacagaaggtgttcgccggacgccgatttgatggcgccaatgaccccgatagcgatctt
tatggcggcttttttagcgacagcgatcgcaagttgatggacgcgctgcgccgggagagc
cccgatgccctggcccgcaaggcctttgattttcatgatgcccgcctgccggagctgttt
tggcgttaccgggcgcgcaattttccggaaaccctcggcgccgaggagctggcccaatgg
cgggagttctgtcgccagcgcctgcgccacccggagggcgggcagctgggtttcgacggc
tttcgggctcggctgtttgagctgtcctccgcatcgctcagcgatcatcagcgtcacatc
ctcgacgagctcaacgactacgctgaggccctggagctggaagggctgtga
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