Spongiibacter taiwanensis: NCG89_06015
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Entry
NCG89_06015 CDS
T08367
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCG89_06015 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
staw03019
]
NCG89_06015 (rhlB)
Enzymes [BR:
staw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCG89_06015 (rhlB)
Messenger RNA biogenesis [BR:
staw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCG89_06015 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
USA44331
LinkDB
All DBs
Position
complement(1289778..1291103)
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AA seq
441 aa
AA seq
DB search
MSNPSENAAPQENGAPENTANSGRKSSSQRNRRGRGNKASGGAPWSVAQFEVPEEAGKTR
FHDLDLDERLMHGIADAGFKYCSPIQAASLPHTLRGNDVIGKAQTGTGKTAAFLITIFND
LLANPIEEERYAGEPRALIIAPTRELVVQIGDDARQLGKHCGLNVVTLIGGMDYQKQLDR
LASDLVDIVVATPGRLLDFENRRDIYLDQVELLVIDEADRMLDMGFIPQVKRIVRSTPKK
THRQTLLFSATFTEDIIRLTEQWTLDPVRVEIEPESVATDTVDQKVYLVESQDKFKVLRN
IVQQKDAKSVIVFANRRDETRRLFERLCKSGIKCGILSGEIPQNKRSRTLQQFKDGEIAC
LVATDVAGRGIHVDGVSHVVNYTLPEEPEDYVHRIGRTGRAGATGTSISFACEDDAFLLP
AIEAELGMKLNCEQPPEELLG
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
gtgtccaacccatcagaaaatgccgcgccccaggagaacggggcgccggaaaatactgcc
aactcaggcagaaaatcctcctcccagcgaaaccgtcgcggtcgcggcaacaaagccagt
ggcggtgcgccctggagtgtcgcccagtttgaggtgcctgaggaggccggcaaaactcgc
tttcacgacctggacttggacgagcgtctgatgcacgggattgccgacgcgggctttaaa
tattgctcgcctattcaggctgcctccctgccgcacaccctgcggggtaacgatgtgatc
ggcaaagcccagaccggtaccggtaagactgccgcctttttgatcacaatttttaacgac
ctattggccaaccccattgaagaggagcgctacgcgggcgagccccgggcattgatcatt
gcgccgacccgggagctggtggtgcagattggcgacgacgctcgccagctgggcaaacac
tgtggcctgaatgtggtgaccctgatcggcggtatggattaccagaagcagctggaccga
ctcgcttcagacctggtggatattgtggttgccacaccggggcgcctgttggattttgag
aatcgccgggatatctacctggatcaggttgaactgttggtgattgatgaggccgatcgg
atgcttgatatgggctttatcccccaggtgaagcgcatcgttcgttctaccccgaaaaag
acccatcgccaaaccctgctgttcagtgccacctttaccgaagatattatccgcctgacc
gagcagtggaccctcgacccggtgcgggtggaaatcgaaccggaatctgttgccaccgat
accgttgaccagaaggtttatctggttgagtcccaggacaaattcaaagtgctgcgcaac
atcgtgcagcagaaggatgccaagtcggtgatcgtatttgctaaccggcgtgatgagacc
cggcgcctgtttgagcggctgtgcaaatccggtatcaagtgcggcattctctcgggtgaa
atccctcagaacaaacgcagccggaccttgcagcaattcaaagacggcgaaattgcgtgc
ctggttgccaccgacgtggcgggccggggtattcacgtggacggcgttagccatgtggtg
aattacacgctgcccgaagagcccgaggactacgttcaccggatcggtcgtaccgggcgg
gccggtgcgacggggacgtccatcagttttgcctgcgaagacgatgctttcttactgcct
gccattgaggcggagctgggtatgaagctcaactgcgagcaaccccccgaagaattgctg
ggataa
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