Spongiibacter taiwanensis: NCG89_06490
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Entry
NCG89_06490 CDS
T08367
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCG89_06490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
staw03019
]
NCG89_06490
Enzymes [BR:
staw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCG89_06490
Messenger RNA biogenesis [BR:
staw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCG89_06490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
USA44417
LinkDB
All DBs
Position
1394416..1395900
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AA seq
494 aa
AA seq
DB search
MSFSSLGLSEPITRAVTELNYSTPSPIQEQAIPAIIQGRDIMAAAQTGTGKTAGFTLPLL
ERLSKGQPAGSNQARALVLTPTRELAAQVGQSVAAYSKYLRMRSTVVYGGVKINPQMMAL
RKGADVLVATPGRLLDLHQQRAVRFDQLEVLVLDEADRMLDMGFIHDLRKILALLPPKRQ
TLMFSATFSDDIRQLAKSFVSDPVEVSVTPRNTTAETVKQWIVPVDKKRKPALLCKLISE
GNWHQVLVFSRTKHGANKLTKQLSDAGITAAAIHGNKSQGARTRALSDFKQNKVRALVAT
DIAARGLDISQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSADEFDYLCSIER
LIKSSLERREVEGFEPDHVLPEGRPISTPHKPRKPRPAGNGNGNQRAAAKPGGNRRRGNA
KPGESGRNSQGNRDNSGARKRPSQAGNSAGNDGGNTSGKPASSRPANGNQKAQGGERKSS
STGRAAPRSFGSLR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctccctgggcctttccgagcccattactcgggccgtgaccgaactaaac
tacagcaccccttccccgatccaggaacaggctattcccgcgatcatccagggccgggac
attatggcggccgcccaaaccggcaccggcaaaactgccggctttaccctgccgctgttg
gagcgcctgtccaaaggtcagcccgccggatccaaccaggcccgtgcgctggtgctgaca
cccacccgagagctggctgcccaggttggccaaagcgttgccgcctacagcaaatatctg
cgcatgcgctccaccgtggtttacggcggcgtcaagatcaacccgcaaatgatggctctg
cgcaaaggtgccgatgtcctcgtggccacaccgggccgactgctggatttgcatcagcaa
cgggccgtgcgctttgaccagttggaagtgctggtgctcgatgaagccgaccggatgttg
gacatgggctttattcacgacctgcgcaaaattctggccctgctgccccccaagcgtcag
accctgatgttctcggcaaccttctccgacgatattcgccagctggccaaatcctttgtt
agcgacccggtcgaggtttccgtcaccccccgcaacaccaccgccgaaaccgtgaagcaa
tggattgtgccggtagacaagaagcgcaagcctgcgctgctgtgtaagctgatcagcgaa
ggcaactggcaccaggtgctggtattcagccgcaccaagcacggcgccaataagctaaca
aaacagcttagcgatgccggcatcaccgccgccgccattcacggcaacaagagtcagggc
gcccgcacccgggccttgagcgatttcaaacaaaacaaggttcgtgctctggtcgccacc
gatatcgccgcccgaggcctggacatcagccagcttccccaagtggttaattttgatctg
cccaatgtgccggaagattatgtgcaccgcatcggtcgtaccggtcgggctggtgccagc
ggtcacgccgtgtcgctggtcagcgccgatgaattcgactacctgtgcagtatcgagcgg
ctgatcaaatcttctctcgagcgccgtgaggtggaaggctttgagcccgatcatgtgctg
ccagaggggcgcccgatcagcactccccacaagccgcgcaagccccgcccagctggcaac
ggcaatggcaatcaacgggccgcagcaaaacccggcggcaatcgccggcgcggtaatgcc
aaacctggtgagtccggccgcaacagccagggcaatcgggataacagcggcgcccgtaag
cgaccctcccaagccggaaacagcgccggcaatgatggcggaaacaccagcggcaaaccg
gccagcagcaggccagccaatggcaatcaaaaagcccagggcggcgaacgcaaatccagc
agcaccgggcgggctgcgccccgcagctttggcagcttgcgctag
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