Spongiibacter taiwanensis: NCG89_06505
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Entry
NCG89_06505 CDS
T08367
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
staw
Spongiibacter taiwanensis
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
staw03009
]
NCG89_06505 (dbpA)
Enzymes [BR:
staw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCG89_06505 (dbpA)
Ribosome biogenesis [BR:
staw03009
]
Prokaryotic type
rRNA helicases
NCG89_06505 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Helicase_C_2
AAA_19
CMS1
P-loop_SecA
UvrA_inter
FancD2
Motif
Other DBs
NCBI-ProteinID:
USA44420
LinkDB
All DBs
Position
complement(1401218..1402603)
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AA seq
461 aa
AA seq
DB search
MNEQAFSSLKLHPALLSNLQDLGYQQMTAIQAMSLPVVLAGGDLIAQSKTGSGKTAAFGL
GILQGLNVQHFAVQALVLCPTRELADQVAKEIRRLARAVHNIKVLSLCGGAPFGPQVGSL
EHGAHIVVGTPGRVADHLRKGNLKLDGLKMFVLDEADRMLEMGFQETLEAIAKKLPAKRQ
TLLFSATFPDQIEAISAKLLHAPERVTVKEQHTNVSIQEYFYKVSGADTRDEILQRLLLK
FRPGSAVVFCSTRKETEELAHTLRQAGFSALALHGELDQKQRDQTLTRFANKSVSIMVAT
DVAARGLDIDALDAVFNYHLARDPEVHVHRVGRTGRAGASGVACSLVGDRDSQKIARLEA
LKGEAISLVSPPSLAGVDGNSYQPPMVTLQIDGGRKQKVRPGDILGALTANGELTGDDVG
KIHIYDNCAYVAVRRRIVSDALRQISQGKLKGRSFRVRKIT
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgagcaagccttttcctccctcaagcttcaccctgccctgctgagcaacctgcaa
gacctgggttatcagcagatgacggccatccaggcaatgagcttaccggtggtgctggcc
ggcggcgacctgattgcccagagcaagaccgggtcgggcaagacggcggcgttcggtttg
ggcatattgcagggcctgaatgtgcagcactttgccgtgcaggcgctggtgctgtgtccc
acccgtgagctggccgatcaggtggccaaggaaattcgtcggctcgcccgggcggtgcac
aatatcaaggtgcttagcctgtgtggtggtgcgccctttggtcctcaggtggggtcactg
gaacatggtgcccatattgtggtgggtacaccagggcgggtggcagatcatttgcgcaag
ggcaatctcaaactcgacggtctgaaaatgtttgtgctggatgaagcagaccggatgctc
gaaatgggctttcaggaaaccctggaggccattgccaaaaaactgccggcaaagcgccaa
accctgttgttcagtgccacctttcccgatcagatcgaagcgattagtgccaagctgtta
cacgcgcccgagcgggtgacggttaaggagcagcatactaacgtcagtattcaggagtac
ttttacaaagtcagcggggcagatactcgcgatgagattctgcagcgcctgttgctgaaa
ttccgccccggcagcgccgtggtgttttgcagtactcgcaaggaaacggaagagctggcc
cacaccctgcgtcaggctggctttagcgcgctggcactccatggcgaattggatcagaag
cagcgcgatcaaacccttacccgctttgccaacaagagtgtttctatcatggtggccact
gacgttgccgcccggggcttggatatcgatgcactggatgcggtgtttaattatcacctg
gccagagatcccgaggtgcatgtgcaccgggttggcagaactggtcgtgctggtgccagt
ggggtggcctgcagtctggttggcgaccgggacagccagaaaattgcccgccttgaagcg
ctgaaaggggaagctatttccctcgtgtcaccgccgagtctcgcgggggtggacggcaat
agctatcagccaccgatggtgaccttgcaaattgatggtggccgcaagcaaaaggtccgc
cccggcgatattctgggcgcgttgaccgccaacggcgagttgacgggcgacgatgttggc
aaaattcatatctacgacaattgtgcctatgttgcagtgcggcgccgaattgtcagtgat
gccctgcggcagatcagccagggcaaactgaaagggcgcagtttccgagtgcgcaaaatc
acgtga
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