Spongiibacter taiwanensis: NCG89_07615
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Entry
NCG89_07615 CDS
T08367
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCG89_07615 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
staw03021
]
NCG89_07615 (rpoC)
03400 DNA repair and recombination proteins [BR:
staw03400
]
NCG89_07615 (rpoC)
Enzymes [BR:
staw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCG89_07615 (rpoC)
Transcription machinery [BR:
staw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCG89_07615 (rpoC)
DNA repair and recombination proteins [BR:
staw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCG89_07615 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
USA44632
LinkDB
All DBs
Position
complement(1639798..1644009)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLNLLKQGQQTDEFDSIRIGLASPELIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFESYVVTDPGMTTLEKGQLLSDEQYFDAMEEFGDDFVAKM
GAEAIMHLLMELDLNEEINRLREEVPATNSETKIKKLSKRLKLIEALADSGNKPEWMIMK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREPPEVWDILAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRARVNAPGETMAFANPEEVHRAYVTG
RAHLQARIKCRLHQVSFDENGERSETRSVVDTTVGRVLLWRIVPEGLPFSMVNQTMTKKA
ISRLLNECYRQVGLKATVILGDQLMYTGFEYSTRSGASIGVNDFEIPEAKAKIVAAADAE
VVEIEKQYASGLVTQGEKYNKVIDIWSRANDLVSKSMMEGLSKESVINRDGEEEEQDSFN
SVYIYADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITQDDCGTDQGLLMTPVIEGGDIIETLGDRVL
GRIVAKDVLVPGSDDLAVAAGVMLDEKWVTTLEEMGIDEIEVRSPITCNTRHGVCSMCYG
RDLARGHLVNRGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAVDSVQVKQDGKVRL
HKLKYVEREDGFLVAVSRSGELAVTDANGRERERYKLPYGAIIKVADRAEVKAGTIVATW
DPHTHPIVTEVAGIVKMSGMEEGITVKRQTDELTGLSSISVMEQSERPAAGKDMRPAITL
VDKQGEELCLAGTNVPAHYFLSDLAIVSLENGAEVKVGDIIARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPADGKPLADGSDHYEVLIPKWR
QLTVFEGEQVEKGEIVSEGPLSPHDILRLKGVEELAKYIVNEIQDVYRLQGVKINDKHIE
VICRQMLRKVNILAAGDSSFIKGEQAEYVRVEEENEMLVAADKIVASYERELLGITKASL
ATESFISAASFQETTRVLTEAAVTGKRDHLRGLKENVVVGRLIPAGTGLAYHKERKLKRE
EAAPSVSAQDVEAALTEALSENN
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttattgaatctattgaaacagggacagcagaccgacgaattcgactctatt
cggattggtctggcgtcaccggagctgattcgctcctggtcattcggcgaagtgaaaaag
ccggaaaccatcaactatcgtaccttcaagcccgagcgggacggtttgttctgcgccaag
atttttggcccggtgaaagactatgagtgcttgtgcggtaagtacaagcgcctgaagcac
cgcggcgtaatctgtgaaaaatgtggtgttgaagtcgcgctggccaaagtgcgtcgggag
cgcatgggccacattgagctggccagccccgtcgctcacatctggttcctgaagtcgctg
cccagccggattggtttgctgctggatatgaccctgcgggatatcgagcgcattctctac
ttcgaatcctatgtggtgactgaccccggcatgacgacgctggaaaagggtcagctgctg
agcgacgagcaatacttcgacgccatggaagaattcggtgatgacttcgttgccaaaatg
ggtgccgaagccatcatgcacctgttgatggagctggacctgaacgaagagattaaccgt
cttcgtgaagaggtgcctgccaccaacagcgaaaccaaaatcaagaagctgtccaagcgc
ctgaagctgatcgaagcgctggccgattccggtaataagcccgagtggatgatcatgaag
gtgctgccggtactgccaccggacctgcgtccgctggtgccgctcgatggtggtcgtttt
gccacctccgacctgaacgatctgtatcgtcgggtgatcaaccggaacaatcgtcttaag
cgtctgctcgatctgaacgctcctgacattatcgtgcgcaacgaaaagcgtatgctgcag
gagtcggtggatgcactgctggataacggccgccgcggccgcgccattaccggttccaac
aagcgtccgctgaagtcgctggctgacatgatcaaaggtaagcagggccgcttccgtcag
aacctgctgggtaagcgcgtcgactactctggtcgttcggttatcgtggtgggtccgacc
ctgcgtctgcaccagtgcggtctgcccaagaagatggctctcgagctgttcaagcccttt
atcttcggcaagctggaagcccgcggtctggcgaccactattaaagccgccaagaaaatg
gttgagcgcgagccgccagaagtgtgggatatcctggctgaggtcattcgcgaacacccc
gtgttgctgaaccgggcgccgacccttcaccgcctgggtattcaggcctttgagcccgtg
ttgattgaaggtaaggctattcagctgcaccccctggtgtgtgcggcctacaacgccgac
ttcgacggtgaccagatggcggtccacgtgccgctgaccctggaagcccagctcgaagcc
cgtgctttgatgatgtcgaccaacaacatcctgtcgcctgccaacggcgagcccatcatt
gttccctcccaggacgtggtattgggtctgtactggatgacccgcgcccgggtgaatgct
cccggcgagaccatggcttttgccaaccctgaagaagtgcaccgcgcctacgtcactggt
cgcgcgcacctgcaagcgcgcattaagtgccgcctgcaccaggtaagctttgatgaaaac
ggcgagcgcagcgagacccgctccgtagtggataccacagtgggtcgtgtgctgctgtgg
agaatcgtgccagagggtctgccattctccatggttaaccagaccatgaccaaaaaggcg
atctcccgcctgctgaacgagtgctaccgccaggtcggcttgaaagccacggttattctg
ggtgaccagctgatgtacaccggttttgagtattccactcgctccggtgcctccatcggt
gttaacgattttgaaattcccgaagccaaggccaagatcgtggctgcggcggatgccgaa
gtggtcgagatcgagaagcagtatgcctctggtctggttacccagggtgagaaatacaac
aaggtgatcgacatttggtctcgcgccaacgacctggtttccaagtcgatgatggagggg
ctgtccaaagagtcggttatcaaccgcgatggcgaagaggaagagcaggactctttcaac
tccgtttacatctatgccgactccggcgcacggggttcaccggcccagattcgtcagttg
gcgggtatgcggggtctgatggccaagccggatggctcgatcatcgaaacgcccattacc
gcgaacttccgtgaaggtctgaacgtactgcagtacttcatctcgactcacggcgcgcgt
aaaggtctggctgataccgcattgaaaaccgcgaactcgggttacctgacccgtcgtctg
gtcgatgtggcccaggatgtggtgatcacccaggacgactgtggtacggatcaaggtctg
ttgatgaccccggttatcgaaggtggtgacatcatcgagaccctgggtgaccgcgtgctg
ggtcgtatcgtcgccaaagatgtgctggtgcccggctccgatgacctggccgttgccgct
ggtgtgatgctggacgaaaagtgggtaaccactctggaagagatgggtatcgatgagatc
gaagtgcgctcgccgattacctgtaacactcgccacggtgtgtgttccatgtgctacggc
cgggacctggcgcgcgggcacctggttaaccgcggtgaatcggtcggtgttattgctgcc
cagtccatcggtgagcccggtactcagctgaccatgcggaccttccacatcggtggtgcg
gcttctcgggccactgccgtggacagcgtacaggttaagcaagacggtaaggttcgtctg
cacaaactgaaatatgttgagcgtgaagatggcttcctggtagcagtaagccgctcaggt
gagctggcggtgaccgatgccaacggccgtgagcgcgagcgctacaagctgccctatggc
gccatcattaaagtggcggaccgcgccgaagtgaaggccggcaccatcgtggcgacctgg
gaccctcacactcaccccatcgtgacggaagtggcaggtatcgtgaagatgtctggcatg
gaagaggggattaccgttaagcgtcaaactgacgagctgactggcttgagcagtatttcg
gtgatggagcagtccgagcgcccggcagcgggtaaggatatgcgtccggcgatcaccctg
gttgataagcaaggtgaggagctgtgcctggcgggtaccaacgtaccggcgcactatttc
ctttccgacctggcaatcgtgtctctggagaacggtgccgaggtgaaggtaggtgacatc
atcgcccgtatcccgcaagagagctccaagactcgggatatcaccggtggtctgccgcgg
gttgccgatctgtttgaggcgcggaagccgaaagagccggccattctggctgaaatctcc
ggtaccgtgagcttcggtaaagaaaccaagggcaagcgtcgcctggtgatcacgcctgcc
gatggcaagccattggctgatggcagcgatcactacgaagtgctgattcccaagtggcgc
cagctcaccgtgttcgaaggtgaacaggtagagaagggtgagatcgtttccgaaggtccg
ctgagcccccacgatatcctgcgcttgaagggtgttgaggagcttgccaagtacatcgtt
aacgaaattcaggacgtttaccgcctgcagggtgtaaagatcaacgataagcacatcgaa
gtgatctgtcgccagatgctgcgcaaggtcaatatcctggccgccggtgactcctccttc
atcaagggcgagcaggccgagtacgtacgggtcgaggaagaaaacgaaatgttggttgcc
gccgacaagatcgtggcctcctacgagcgtgagctgctgggtatcaccaaggcatcgctg
gcgactgagtccttcatctctgcggcctccttccaggagaccacccgggtgctgaccgag
gctgccgtgaccggcaagcgcgatcacctgcgtggcctgaaagagaacgtggttgttggt
cgtctgattccggcgggtaccggtctggcttaccacaaagagcgcaagctgaagcgggaa
gaggcggcgcctagcgtgtctgcccaggacgtcgaagcggcgttgactgaggccctgagc
gaaaataattga
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