Spongiibacter taiwanensis: NCG89_08970
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Entry
NCG89_08970 CDS
T08367
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03420
Nucleotide excision repair
staw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCG89_08970 (uvrD)
03430 Mismatch repair
NCG89_08970 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
staw03400
]
NCG89_08970 (uvrD)
Enzymes [BR:
staw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCG89_08970 (uvrD)
DNA repair and recombination proteins [BR:
staw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCG89_08970 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NCG89_08970 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
USA41651
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All DBs
Position
1949112..1951274
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AA seq
720 aa
AA seq
DB search
MDVSYILDGLNDAQRDAVTADSPGTLVLAGAGSGKTRVLVHRIAWKIAIENLSPYSILAV
TFTNKAAKEMKGRIEQLLGQPLHGGMWVGTFHGLAHRLLKAHASEAKLPSNFQILDSDDQ
LRLLKRIHKELNLDDSRWPPRQSAYFINGHKDEGRRAAHIDDYGGDLYVKTMLQVYRRYE
EICQQQGVVDFAELLLRALELWRDNPAVLAHYQGRFKHVLVDEFQDTNAVQYAWLRLLAG
KGMAITAVGDDDQSIYGWRGARIENIQQFSKDFADTRIIRLEQNYRSTATILNAANAVIK
NNSQRLGKELWTSGEDGEQIKLFAGFNEQDEARYIVDSIESLLKDDYRRADVGILYRSNA
QSRVLEEFLIRAGLPYRIYGGQRFYDRLEIKNALAYLRLIALRDDDTAVERVINTPTRGI
GNRTVEILRDYARQHQLSLWQSAVAIIQQDLLAARASNALRSFLSLVEDMAQQSREMPLD
GQVDYVIERSGLIEFHQKEKGEKGQARVDNLHELVSAARSYQADDEDGDILRQFLDDAAL
DAGEQQADEHEDCVQLMTLHSAKGLEFPVVFIAGVEENLFPHKMSMEDPTRLEEERRLAY
VGITRAEQKLFLTYAESRRLHGQENFNSLSRFIKEIPNELIDEVRLNNTVTRPSSFASTS
ISQQAAANGIALGQRVLHSIFGAGVILSFEGQGASARVQVNFEDEGSKWLVLQYANLELL
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttatattttagacgggctcaacgacgcccagcgcgacgcagtgacggca
gacagccccggcactctggtattggctggtgccggcagcggcaaaacccgggtgctggtg
caccgcatcgcctggaagatcgcaatcgagaacctctcgccctacagcattctggcggtg
acctttactaacaaggcagccaaggagatgaagggccgtatcgagcagctgctcggccag
ccccttcacggcggtatgtgggtgggcacctttcacggcctggctcaccggctgctcaag
gcccacgccagcgaggccaaactacccagtaattttcagattctcgacagcgacgatcag
cttcgcctgctcaaacgcattcacaaagaactgaatctggacgacagccgctggccaccg
cggcagtcggcgtactttatcaatggccacaaagacgagggccgccgggccgcccatata
gacgattacggtggcgatctgtacgtgaagaccatgctgcaggtgtatcgccgctacgag
gaaatttgccagcagcaaggagtggtggactttgccgaactgttgctgcgcgcgctggag
ttgtggcgagataaccccgccgtgctggcccactatcagggccgcttcaagcatgtgctg
gtggacgagtttcaggataccaacgccgtgcagtatgcctggctgcgcctgctggcgggc
aagggcatggccattaccgcggtgggcgatgacgatcagtctatttacggctggcggggc
gcccgcatcgaaaatatccaacagttctccaaggactttgccgacacccgcattatccgt
ctggagcaaaactaccgctccaccgccaccatcctcaacgccgccaacgcggtgatcaaa
aacaacagtcaacggctcggcaaagagctgtggaccagcggcgaagacggcgagcagatc
aagctgtttgcgggtttcaatgagcaggatgaagcccgctacattgtcgacagcatcgag
tcgctgctgaaagacgattaccggcgggccgatgttggcattctctatcgcagcaacgcc
caatcccgggtattggaagaatttctgattcgtgcgggcctgccctaccgcatttacggc
ggtcagcgtttctacgaccggctggagatcaaaaacgccctggcctatctgcggttgatc
gccctgcgcgatgacgacaccgccgtggagcgggtcatcaacacacccacccggggcatt
ggcaatcgcacggtggaaatcctgcgggattacgcccgccagcatcagttgtcgctgtgg
cagtctgccgtggcgatcattcagcaggacctgctggcagcgcgggccagcaacgccctg
cgcagctttttgtcgctggtcgaagacatggcccagcagagccgggagatgccgctggac
ggtcaggttgactatgtgatcgagcgctccgggctgatcgagtttcaccaaaaggaaaag
ggcgagaagggtcaggcccgggtcgacaacctgcacgagctggtcagcgccgcccgcagt
taccaggccgacgatgaggacggcgatattctgcgccagtttctggacgacgccgccctc
gatgccggcgaacagcaggccgacgagcacgaggactgcgtgcagctgatgaccctgcac
tcggccaagggcctggaattcccggtagtgtttattgccggggtggaagaaaacctgttc
ccccacaaaatgtcgatggaagacccgacccggctggaagaggagcgccgcttggcctac
gtgggcatcacccgggccgagcaaaagctttttttgacctacgccgaatcccgccggctg
cacggccaggaaaacttcaacagcctgtcgcgctttatcaaggaaattcccaacgagctg
atcgacgaagttcgcctgaacaacaccgttactcgccccagcagttttgcctcaaccagc
atcagccagcaggcggccgccaacggaattgccctgggccagcgagtgttgcacagcatc
ttcggcgccggggtcattttaagttttgagggccagggtgccagcgcccgggtgcaggtg
aattttgaggacgaaggcagcaaatggctggtgctgcagtatgccaatctggagctgctg
tga
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