Spongiibacter taiwanensis: NCG89_15810
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Entry
NCG89_15810 CDS
T08367
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03030
DNA replication
staw03430
Mismatch repair
staw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCG89_15810 (dnaE)
03430 Mismatch repair
NCG89_15810 (dnaE)
03440 Homologous recombination
NCG89_15810 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
staw03032
]
NCG89_15810 (dnaE)
03400 DNA repair and recombination proteins [BR:
staw03400
]
NCG89_15810 (dnaE)
Enzymes [BR:
staw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCG89_15810 (dnaE)
DNA replication proteins [BR:
staw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCG89_15810 (dnaE)
DNA repair and recombination proteins [BR:
staw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCG89_15810 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
USA42991
LinkDB
All DBs
Position
3488072..3491551
Genome browser
AA seq
1159 aa
AA seq
DB search
MTSDFVHLRVHSEYSLVDSVIRVKSLCKTVAAMDMPAVALTDLCNFYALIKFQKAAQGAG
LKPIFGADFFVRDDDAPDQIFTLCLLAQNLRGYKNLTELISRAYLRGQYQGKAYLQRSWV
EELNDGLIALSGGREGDVGQLLLSNKTGLARASLDRWQSVFGDRYYLELQRTGRQYEDDY
IHAAVALASQCDCPVVATNDVRFLESDEFEAHEARVCIRDGRVLDDPRRPRLYSDQQYLR
SPDEMAELFADIPEALQNTVEIAKRCSVEIELGTYYLPEYPIPEGMTQDDFFRQLSHDGL
TERLDFLFDRNAADFAEKEKEYRARLDFELDIILQMGFPGYFLIVMDFIQWAKDNAIPVG
PGRGSGAGSLVAYALKITDLDPIEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVINYVA
DNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGMTLQKAYDQEA
DLRDFLSGDEQAQEIWDMATQLEGVVRGVGKHAGGVVIAPSKLTDFAPLYCDETGAGLVT
QFDKNDVEDAGLVKFDFLGLRTLTIIDWALKIINAKRGKEGEDDLDIMAIPLDDAPSFDL
LKKAETTAVFQLESRGMKDLIKRLLPDCFEDIVALVALFRPGPLQSGMVDDFINRKHGRA
ELAFPHPQYQHECLRPILQPTYGIILYQEQVMQIAQEMGGYTLGGADLLRRAMGKKKPEE
MEKQRVLFLAGAQEKGHSEELASNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKTHYP
APFMAAVMSSELDNTDKIVIFIEECRAMKLDYKLPSVNEGEYMFTVNDKGQIVYGLGAIK
GLGEGPVENIIAARSKGGAFKNLFDFCERTDPRKVNKRAIEALIRAGAFDDLGEDRAVLM
AAMAEAVQVAEQSAKNAESGMVDLFGDTLAVDNRDVYAPFRNVRRWNTKERLQGEKDTLG
LYVTGHPIDDYEAELRRFVPKRIVDLQPDKQAQTIAGLVVNMRTMKNKRGDTMAFVQLDD
RSARIEVALFSDSYEEHRDKLIKDSVLVVEGVCSFDEYSGGKKMRVKSVRSLAEAREQSA
RELLLTLSSDALSERSLEQLKGALSVARGGRCPVVVQYQRPEGRGRIRFGEAWNILPKDD
VLQRLRDDYGVNNVVINYE
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgactagcgattttgttcatttgcgggtgcactcggaatattccctggtcgacagcgtt
attcgggtgaaatccctttgtaaaacggttgccgccatggatatgccggcggtggccctc
accgatttgtgtaacttctacgccctgatcaagtttcaaaaggcggcccagggggccggc
ctgaagccgatttttggcgcggatttttttgtgcgcgacgatgacgcgccggatcagata
ttcaccttgtgcctgctggcccaaaatctccgtggctacaaaaacctgacagaactcatt
tcccgcgcttacttgaggggccagtatcagggtaaggcgtacttgcagcgcagttgggta
gaagagctcaacgatgggttgattgccctgtcgggcggccgcgaaggcgatgttggtcaa
ttgctgttgagcaataagaccgggttggcccgggcaagcctcgaccgctggcagtcggtg
tttggtgatcgctactacctcgaactacagcgcaccggccgacaatacgaagatgactac
attcacgcggcggtggcgttggccagccagtgtgattgcccggtggttgccactaacgat
gtccgctttctggagagcgacgagtttgaggcccacgaggctcgtgtctgtatccgcgat
gggcgggtgttggacgaccctcggcgcccgcggctatacagtgatcagcagtacttgcgc
agccccgacgaaatggcagagctgtttgcagatattccagaagccctgcaaaacacggtg
gaaattgccaagcgttgcagtgtggagattgagctcgggacttattatttgcctgagtat
ccgattcctgagggaatgactcaggacgacttctttcgccagctcagccacgacggtctt
accgagcgacttgattttctgtttgatcgcaacgcggccgatttcgccgagaaggaaaaa
gaatatcgggcgagactcgatttcgagctggatatcatcctgcagatgggttttcccggc
tacttcctgatcgtgatggactttatccagtgggccaaggacaacgccattccggtaggg
ccggggcgggggtcgggtgccggctccctggtggcctatgcgctgaagatcaccgacctc
gaccccatagaatacgacctgctgttcgagcgctttctgaatcccgaacgggtgtcgatg
cccgacttcgacgtcgacttctgcatggaaggtcgcgatcgggtgatcaattatgtggcc
gacaattacggccgagatgcggtgagccagatcattaccttcggcacaatggcggccaag
gcggtggtgcgggatgttgcccgggtgcagggtaagtcctacggtttggcggacaagttg
tcgaagctgattccctttgaagtgggcatgaccttgcaaaaggcctatgaccaggaggcg
gatctgcgggactttctcagtggtgacgagcaagcccaggaaatctgggatatggctacc
cagttggaaggggtggttcggggtgttggtaagcacgccggcggggtggtgattgcgcca
tctaaactgacggattttgcgcccctgtactgtgatgaaaccggggccggtctggtcacc
cagtttgataagaatgatgttgaagatgcaggcttggttaagtttgacttccttggtcta
cgcaccctgaccatcatcgattgggccctgaaaatcatcaatgccaagcgcggcaaagaa
ggtgaagatgacctggacattatggccatcccgctggatgacgcgcccagctttgacttg
ctgaaaaaggccgaaaccaccgcggtgttccagcttgaatcccggggtatgaaggatctg
atcaagcgcctgctgccagactgttttgaagacattgtcgcactggtggccctgttccgc
cctgggccgctgcagtccgggatggtggatgactttatcaaccggaagcacggccgtgcc
gaattggcctttccccatccccagtatcagcacgaatgcctgcggcccatcttgcagccg
acctacggcatcattctctaccaagaacaggttatgcagatcgctcaggaaatgggcggt
tatacactcggtggcgctgatttgttgcgccgggcaatgggtaagaaaaaacccgaggag
atggagaagcagcgggtgctgtttctcgccggtgcccaggaaaaaggccacagcgaggag
ttggcctccaacatcttcgacctgatggaaaaatttgccgggtatggttttaacaagtct
cactcggcggcctacgcgctggtgtcttatcagaccgcctggctgaaaacccattacccg
gcgccgtttatggcagcggtaatgagttcggaactggataacaccgacaaaatcgtgatc
ttcatcgaggagtgtcgggcaatgaagctcgactacaaattgccctcggtgaatgaaggt
gaatatatgttcaccgtgaacgacaaaggacaaattgtttacggcctgggggcgatcaaa
ggtctcggcgaaggcccggtagaaaatattattgccgctcgcagcaaaggcggagccttt
aaaaatctgtttgatttctgcgagcgcacggacccgcgcaaggttaacaagcgggccatt
gaggcgctgattcgcgccggcgccttcgacgacctgggcgaagatcgtgctgtgttaatg
gcggccatggcagaagcggtacaggtcgccgagcaatcggccaaaaatgctgagagcggc
atggtcgatctgtttggcgataccttggcggtggataaccgggatgtgtatgcgcccttt
cgcaatgtgcggcgttggaataccaaggagcgcctgcagggggaaaaggacactctgggt
ctttatgtgaccgggcatcctatcgacgattatgaagccgagctgcggcgatttgtgccc
aagcgtattgtcgatctgcagccagacaagcaggcccagaccatcgccggtttggtggtc
aatatgcgcaccatgaagaacaaacgcggcgacaccatggcctttgtgcagctcgatgac
cgcagtgcacggattgaggtggccctgtttagcgatagctatgaagagcatcgggacaag
ttgatcaaagacagtgtgctggtggtcgagggggtttgcagctttgatgaatacagtggc
ggcaagaaaatgcgggtcaaatcggtccgcagcctggctgaggcaagagaacagagcgcc
cgggaactgttgctgaccttgtcttcagatgccttgagcgagcgcagtctggagcagctc
aaaggcgcgctaagtgtggctcggggcggtcggtgtccggtggttgtgcaataccagcgc
cccgaagggcgcggtcgcatccgcttcggcgaggcctggaatattctgcccaaagacgat
gtcttgcagcggctgcgcgatgattacggtgtcaacaacgtggttatcaattacgaataa
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