Sphingomonas taxi: MC45_06520
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Entry
MC45_06520 CDS
T03398
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
stax
Sphingomonas taxi
Pathway
stax03410
Base excision repair
stax03430
Mismatch repair
stax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MC45_06520
03430 Mismatch repair
MC45_06520
03440 Homologous recombination
MC45_06520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stax03400
]
MC45_06520
DNA repair and recombination proteins [BR:
stax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MC45_06520
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MC45_06520
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MC45_06520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF7739
Motif
Other DBs
NCBI-ProteinID:
AIT06100
UniProt:
A0A097EEV9
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Position
complement(1455859..1457613)
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AA seq
584 aa
AA seq
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MTPVLGVSHSILGQPWHWRSLAADARDGFGADDLVTQLLLARGAERETLDQHRAPSIRAF
MPDPSVFRDMDRAAIRLADAVQAGESVAVFGDYDVDGATSAALMILVLRDLGLEARPYIP
DRLLEGYGPSGDALVRLAGEGASLIVTVDCGAQAFEALAMAHAHPVDVVVVDHHKCAAAL
PLAHALVNPNRLDEDEGAAHGHLAAVGVCFLLAAALLRTLEARGFFADRPKPNLIHHLDI
VALGTVADVAQLRGLNRAFVAQGLKVMAQRRNVGLAALIEASRLTRAPTCSDLGFALGPR
INAGGRVGRADLGVRLLTTRDPDEARAIAEELDRLNEERRLIEAGVQQAAELLANDGRRV
VVVSGEGWHPGVIGIVAGRLKEKFGRPAIVIAIGEDGLGKGSGRSIAGVDLGAAVLAAKE
QGLLVAGGGHAMAAGLTIAADGIAAFADFLEERLAAGVDRAIGERALLVDAVLAPGGINP
LLVESLDVGGPYGMGWPAPRIAAGPVRIIKADVVGSGHVRAVVAGDDGRSFKAVAFRAAD
TALGQALLAAAPHRRLWLAGRARIDDWGSRPAAEMHLEDAAWAN
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgacccccgttctcggcgtatcgcattcgattctcggccagccctggcattggcgcagc
ctcgccgccgacgcgcgcgacggtttcggtgccgacgatctcgtcacgcaattgctgctc
gcccgcggcgccgagcgcgagacgctcgaccagcatcgcgcgccgtcgatccgcgccttc
atgcccgacccgtcggtgttccgcgacatggaccgcgccgcgatccgcctcgccgatgcg
gtgcaggcgggcgagagcgtcgcggtgttcggcgattacgatgtcgacggcgcgacctcg
gcggcgctgatgatcctcgtgctgcgcgatctcgggctcgaggcgcggccgtacattccc
gaccggttgctcgaaggctatggcccgtcgggcgacgcgctggtccggctggcgggggag
ggggcgtcgctgatcgtcaccgtcgactgcggcgcacaggcgttcgaggcgctggcgatg
gcgcacgcgcatccggtcgacgtcgtcgtcgtcgaccaccacaaatgcgccgccgcgctg
ccgctggcgcatgcgctggtcaatcccaaccggctcgacgaggacgaaggcgcggcgcac
ggccatctcgccgcggtcggcgtctgctttctactggccgcggcgctgctgcgcacgctg
gaggcacgcggcttcttcgccgatcggcccaagcccaatctgatccaccatctcgacatc
gtcgcgctcggcaccgtcgccgacgtcgcgcagctgcgcggcctcaaccgcgccttcgtc
gctcaggggctcaaggtgatggcgcagcgccgcaacgtcggcctcgccgcgttgatcgag
gcgtcgcggctgacgcgcgcgccgacgtgcagcgacctcggcttcgcgctcgggccgcgg
atcaacgccggcggccgggtgggccgcgcggatctaggcgtgcggctgctcaccacgcgc
gatcccgacgaggcgcgcgcgatcgcggaggaactcgaccggctcaacgaggagcgccgc
ctgatcgaggcgggggtgcagcaagccgccgagctgctcgccaacgacggccgccgcgtc
gtcgtcgtctccggcgagggctggcatcccggcgtgatcggcatcgtcgccggacggctg
aaggagaagttcggccggccggcgatcgtcatcgcgatcggcgaggacgggctcggcaaa
ggctcaggccggtcgatcgccggggtcgatctcggcgcggcggtgctcgcggcgaaggag
cagggcctgctcgtcgccggcggcggccatgcgatggcggcggggctgacgatcgccgcc
gacggcatcgccgccttcgccgatttcctcgaagagcggctggccgccggcgtcgaccgc
gcgatcggtgagcgcgcgttgctggtcgacgcggtgctcgcgcccggcgggatcaacccg
ctgctggtcgaatcgctcgatgtcggcggaccgtacggcatgggctggccggcgccgcgg
atcgccgccgggccggtgcggatcatcaaggcggacgtcgtcggcagcggccacgtccgc
gcggtggtggcgggcgacgacggccgcagcttcaaggcggtggcgttccgcgccgccgac
accgcgctggggcaggcgctgctcgccgccgcgccgcaccgccggctatggctcgccggc
cgcgccaggatcgacgattggggcagccgcccggcggcggaaatgcacctggaagacgcc
gcctgggcgaattga
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