Streptococcus pasteurianus: SGPB_0083
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Entry
SGPB_0083 CDS
T01524
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stb
Streptococcus pasteurianus
Pathway
stb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SGPB_0083 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stb03021
]
SGPB_0083 (rpoB)
03400 DNA repair and recombination proteins [BR:
stb03400
]
SGPB_0083 (rpoB)
Enzymes [BR:
stb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SGPB_0083 (rpoB)
Transcription machinery [BR:
stb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SGPB_0083 (rpoB)
DNA repair and recombination proteins [BR:
stb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SGPB_0083 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
BAK29220
UniProt:
F5X480
LinkDB
All DBs
Position
86615..90187
Genome browser
AA seq
1190 aa
AA seq
DB search
MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDNGLREVFEDVLPITNFTD
TMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVRNTIEKDIHKNPADSRTDEALKE
IYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGRYKINKKLNVKTRLLNQTIAENLV
DTETGEILVEAGTVMTRDVIDSIAEQLDGDLNKFVYTPNDYAVVTEPVVLQKFKVVSPVD
PDRVVTIVGNANPDDKARALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGELL
ANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYGH
LNKYGFIQTPYRKVDRTTGVVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGRH
QGNNQEFPSNIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
YVGTGMEYQAAHDSGAAVIAKHDGRVVFSDAEKVEVRREDGSLDVYHITKFRRSNSGTAY
NQRTLVKVGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWDGYNYEDAVIMSERLVKE
DVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWDTVREAGMDSDAKTVLYDGRTGE
PFDNRVSVGIMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDNEVELRDLDEGEDDDVMHVDDLEKARQKQETESAEKVEVSAEENK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgaagttcagtacggaaaacaccgtacacgtcgtagcttttcaagaatc
aaggaagttcttgatttacctaacttgattgaaattcaaacggattcttttaaagacttc
ttggataatggattgagagaagtttttgaagatgtacttccgattacaaactttacggat
actatggagcttgaatttgttggttacgaattaaaagagcctaaatatacgcttgaagaa
gctcgtatccacgatgcatcttattcagcacctatttttgtaaccttccgtttgattaat
aaagaaacaggagaaatcaaaactcaagaagttttcttcggtgatttcccaatcatgact
gaaatgggtacattcatcatcaacggtggtgaacgtattatcgtttctcagttagttcgt
tctcctggtgtttatttcaacgataaagttgataaaaacggtaaagttggttacggttca
actgtaattcctaaccgtggagcttggcttgaattagaaacagattcaaaagacattgct
tacacacgtattgaccgtacacgtaaaattccatttacaacacttgtacgtgcacttggt
ttctcaggtgatgatgaaatcgtggatatcttcggtgacagcgagcttgttcgtaatact
attgaaaaagatattcataaaaatccagcagattcacgtactgacgaagcgcttaaagaa
atttacgaacgccttcgtccaggtgaaccaaaaacagccgatagctcacgtagtttgctt
gtagctcgtttctttgacccacgtcgttatgacttggcagctgttggacgttacaaaatc
aataaaaaacttaacgtcaagactcgtctcttgaaccaaactatagctgaaaacttggtt
gatactgaaactggtgaaattcttgttgaagctggtacagtaatgacacgtgacgtgatt
gattcaattgctgaacaattagatggtgaccttaacaaatttgtttacacaccaaatgat
tacgctgttgtcactgaacctgtcgttcttcaaaaattcaaagttgtgtcaccggttgat
ccagaccgcgttgttacaatcgtaggtaatgcaaatcctgatgataaagcgcgtgcactt
acaccagcagacatcttggctgaaatgtcatacttccttaatcttgctgaaggtcttggt
aaagttgacgatatcgaccaccttggtaaccgtcgtattcgtgccgttggtgaattgctt
gctaaccaattccgtattggtcttgctcgtatggaacgtaatgttcgtgaacgtatgtca
gttcaagacaatgaagtgttgacaccacaacaaatcatcaacattcgtcctgtaactgcg
gctgttaaagaattcttcggttcttctcaattgtcacagttcatggaccaacacaaccca
ctttctgaattgtctcacaaacgtcgtttgtcagccttaggacctggtggtttgactcgt
gaccgtgctggttatgaagttcgtgacgtgcactacactcactatggtcgtatgtgtccg
attgaaactcctgaaggacctaacatcggtttgattaataacttgtcaacatacggacat
cttaataaatatggtttcatccaaacaccatatcgtaaagttgaccgtactactggtgtg
gttacaaacgaaattgtttggttgactgccgatgaagaagatgaatacacggtagcgcaa
gctaactcgaaacttaacgaagatggaacattcgctgaagaaattgttatgggacgtcat
caaggtaataaccaagaattcccatcaaacatcgttgacttcgtggatgtttctcctaaa
caagtagttgccgttgcgacagcatgtattcctttccttgaaaatgatgattcaaaccgt
gcccttatgggtgccaacatgcaacgtcaagcggtgccattgattgacccacatgcacca
tatgttggtactggtatggaatatcaagcagctcacgattctggtgccgctgttatcgct
aaacatgatggacgcgtagtcttctcagacgctgaaaaagttgaagttcgtcgtgaagat
ggttcacttgatgtttaccacattactaaattccgtcgttcaaactcaggtacagcatac
aaccaacgtacacttgttaaagttggtgatattgttgaaaaaggtgacttcattgctgac
ggaccttctatggaaaaaggtgaaatggcacttggtcaaaacccaatcgttgcctacatg
acatgggatggttacaactatgaagatgccgttatcatgagcgaacgtcttgttaaagaa
gatgtttacacatcagttcacttggaagaatttgaatcagaaacacgtgatactaagtta
ggccctgaagaaatcactcgcgaaattccaaacgttggtgaagaagctcttaaagacctt
gacgaaatgggtattatccgtattggtgctgaagttaaagaaggtgatatccttgtaggt
aaagtaacacctaaaggtgaaaaagacctttctgctgaagaacgccttcttcacgcaatc
ttcggtgataaatctcgtgaagtacgtgatacatcacttcgtgtaccacacggtggagac
ggtgttgttcgtgacgttaaaatcttcacacgtgctaacggtgatgaattgcaatcaggt
gtcaacatgctcgttcgtgtttacattgcacaaaaacgtaaaatcaaagtcggagataaa
atggccggtcgtcacggaaacaaaggggttgtttctcgtatcgttcctgttgaagacatg
ccatatcttccagacggaactccagttgatatcatgttgaaccctcttggggtgccatct
cgtatgaatatcggacaagttatggaacttcaccttggtatggcagctcgtaacctcggt
attcacattgcaactccagtctttgacggggcaacttcagaagacctttgggatactgtt
cgtgaagctggtatggatagcgacgctaagacagttctttatgacggtcgtacaggtgaa
ccatttgataatcgtgtctctgttggtatcatgtacatgatcaaacttcaccacatggtt
gatgataaacttcacgctcgttcagttggtccttactcacttgttacacaacaacctctt
ggtggtaaagcacaatttggtggacaacgtttcggtgaaatggaagtttgggctttggaa
gcttatggtgcatcaaatgtccttcaagaaatcttgacatacaagtcagatgatgtgact
ggacgtcttaaagcttatgaagctatcactaaaggtaaaccaattccaaaaccaggtgta
ccagaatcattccgagtgcttgttaaagaattgcaatcacttggtcttgatatgcgtgtg
cttgatgaagatgataacgaagtagaacttcgtgatcttgatgaaggtgaagacgacgac
gttatgcacgttgatgaccttgaaaaagctcgtcaaaagcaagaaactgaatctgctgaa
aaagtagaagtttctgctgaagaaaataaataa
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