Streptococcus pasteurianus: SGPB_0084
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Entry
SGPB_0084 CDS
T01524
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stb
Streptococcus pasteurianus
Pathway
stb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SGPB_0084 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stb03021
]
SGPB_0084 (rpoC)
03400 DNA repair and recombination proteins [BR:
stb03400
]
SGPB_0084 (rpoC)
Enzymes [BR:
stb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SGPB_0084 (rpoC)
Transcription machinery [BR:
stb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SGPB_0084 (rpoC)
DNA repair and recombination proteins [BR:
stb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SGPB_0084 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAK29221
UniProt:
F5X481
LinkDB
All DBs
Position
90364..94002
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKLQEYGQGSFVAKMGAEAIQDLL
KRVDLKSEIAELKEELKTATGQKRIKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEPGREGEGMIFKDRDEAVMAYRNGYVHLHTRVGI
AVDSMPNKPWTDEQKHKILVTTVGKILFNDIMPEDLPYLQEPNNANLTEKTPDKYFLAPG
QDIQSAIDSLEINVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHSKVEQINKAFRRGLMTDDDRYVAVTTTWREAKEELEQRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEVTETL
EERLVGRYTKKSVKHPETGEVIVGSDVLITEDMAAEIVKAGVEEVTIRSVFTCNTRHGVC
RHCYGVNLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVVDIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVAVGDE
VHRGAPLTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRIMDPGDTELLPGTLMDIADFTDANKDVVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNELEISEEA
ETVEATVSTGAE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaagtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactatcgtacgctcaaa
ccagaacgtgaaggtctttttgatgaagtaatctttggaccaacaaaagactgggaatgt
gcttgtggtaaatataaacgtattcgttataaaggaattgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaagttcgtcgtgaacgcatgggacacattgaattgaaagctcca
gtatcacacatctggtacttcaaaggtattccatcacgcatgggacttactcttgatatg
agtccacgtgctcttgaagaagttatttacttcgctgcttacgtagttattgatccaaaa
gatactccgcttgaaccaaaatcacttttgactgagcgtgaatatcgtgaaaaattacaa
gaatacggacaaggctcatttgttgcgaaaatgggtgctgaagctatccaagatcttctt
aaacgcgttgatttgaaatctgaaatcgctgaacttaaggaagaattgaaaacagcaaca
gggcaaaaacgtatcaaagctgtccgtcgtttggacgtgcttgatgccttctacaaatct
ggtaacaaaccagaatggatggtacttaacatcttgccagttattccaccagatcttcgt
ccaatggttcaattggatggtggacgtttcgctgcatctgacttgaatgacctttaccgt
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgaattgaatgccccaggtatc
attgtgcaaaatgaaaaacgtatgttgcaagaagctgttgatgctcttatcgataacggt
cgtcgtggtcgtccaatcactggtcctggtagccgtcctcttaaatctttgagccacatg
cttaaaggtaaacaaggtcgtttccgtcaaaacttgcttggtaaacgtgttgacttctct
ggacgttcagttatcgccgtaggtccaacacttaaaatgtatcaatgtggtgtgccgcgt
gaaatggctatcgaattgttcaaaccattcgtaatgcgtgaaattgttgcgcgtgactat
gctggtaacgttaaagcagcgaaacgtatggttgaacgtggtgatgaacgtatttgggat
attcttgaagaagttatcaaagaacatccagtactgcttaaccgcgcaccgactcttcac
cgtttgggtatccaagccttcgaaccagtccttatcgatggtaaagcacttcgtcttcac
ccacttgtttgtgaagcctacaatgccgacttcgatggtgaccaaatggccatccacgta
ccactttctgaagaagcacaagctgaagcacgtcttcttatgcttgccgcagaacacatc
cttaaccctaaagatggtaaaccagtcgtaacaccatctcaagatatggttcttggtaac
tactaccttactatggaagaaccaggtcgtgaaggtgaaggaatgatcttcaaagaccgt
gatgaagcagttatggcttaccgtaatggttatgttcacttgcatactcgtgtgggtatt
gccgttgatagcatgccaaataaaccatggactgacgaacagaaacataaaatcctggtt
acaactgtaggtaagattctcttcaacgatatcatgcctgaggatttaccttaccttcaa
gagccaaacaatgctaacctaacagaaaaaactccagataaatacttcttagcaccagga
caagatattcaatctgctattgacagcttggaaatcaatgtaccatttaagaagaaaaat
cttggaaatatcattgcggaaatctttaaacgtttccgtacaacagaaacatcagctttc
cttgaccgcttgaaagaccttggttactatcattcaactcttgctggtttgacagtaggt
atcgccgatatcccagttatcgataacaaacaagaaattatcgatgcagctcacagcaaa
gttgaacaaatcaacaaagccttccgtcgtggtttgatgactgatgatgaccgttatgtt
gctgttacaacaacatggcgtgaagctaaagaagaacttgaacaacgtctgattgaaaca
caagatcctaagaatcctatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacaacttgccggtatgcgtggtttgatggctgctccgaacggacgtatcatg
gaattgcctatcctatctaacttccgtgaaggtttgtctgtcttggaaatgttcttctca
actcacggtgctcgtaaaggtatgaccgatacagcccttaagactgccgactctggttac
cttactcgtcgtttggttgacgttgcccaagatgttatcattcgtgaagatgattgtgga
actgaccgtggtcttgttattcgtgccattactgacggtaaagaggtgacagaaactctt
gaagagcgtctggttggtcgttacactaagaaatctgttaaacatcctgaaactggcgaa
gttattgttggttcagatgtattgattactgaagatatggcagctgaaattgttaaagct
ggtgttgaagaagttacaatccgttcagtattcacatgtaacactcgtcatggtgtctgc
cgtcactgttatggtgtcaaccttgcaacaggtgatgcggttgaagttggtgaagcagtt
ggtacaattgccgctcaatctatcggtgaacctggtacacagcttacaatgcgtactttc
cacacgggtggtgttgcgtcaaataccgatatcacacaaggtcttcctcgtatccaagaa
atctttgaagctcgtaatcctaaaggggaagccgttattactgaagttaaaggtactgtt
gttgacatcgaagaagatgcttctacacgtactaagaaagtttacgttcaaggtaaaact
ggtatgggtgaatacgtggtaccattcactgcccgcatgaaagttgctgttggtgatgag
gtacaccgtggtgctccacttactgaaggttctatccaacctaaacgtctccttgaagtt
cgtgacacattatcagttgaaacttaccttcttgctgaagtacaaaaagtttaccgtagc
caaggggtagaaatcggtgataaacacgtcgaagtaatggttcgccaaatgcttcgcaaa
gttcgtatcatggatccaggtgatacagaacttctcccaggcacacttatggatattgca
gactttacggatgctaacaaagatgttgttatctctggtggtatccctgcaacatcacgt
ccagtgcttatggggattacaaaagcttcgcttgaaactaactcattcttgtcagccgca
tcattccaagaaacaactcgtgttcttacagatgctgctatccgtggtaagaaagatcat
cttcttggtcttaaagaaaatgttatcatcggtaaaatcattccagctggtacaggtatg
gctcgttaccgtaaccttgaaccacaagctgttaatgaacttgaaataagtgaagaagca
gaaacagttgaagcaaccgtttcaacaggtgctgaataa
DBGET
integrated database retrieval system
