Streptococcus pasteurianus: SGPB_0532
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Entry
SGPB_0532 CDS
T01524
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stb
Streptococcus pasteurianus
Pathway
stb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGPB_0532 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stb03019
]
SGPB_0532 (deaD)
03009 Ribosome biogenesis [BR:
stb03009
]
SGPB_0532 (deaD)
Enzymes [BR:
stb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SGPB_0532 (deaD)
Messenger RNA biogenesis [BR:
stb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SGPB_0532 (deaD)
Ribosome biogenesis [BR:
stb03009
]
Prokaryotic type
rRNA helicases
SGPB_0532 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BAK29644
UniProt:
F5X5F4
LinkDB
All DBs
Position
553707..555287
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AA seq
526 aa
AA seq
DB search
MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIDTNRNVVQTLVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLF
SATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSIIEKLTKK
RMKGLKPATADEAFKAKKKVALKKIERDFADEAIRANFDKFKGDAVKLAAEFTPEELALY
ILNLTVKDPDTLPKVEIAREKPLPFKPSGGGFNNRKGGRGNGRGRDNRRGGRSDRKRDDR
DNNSYRDFKRTSSKNKRDFQNKDNKRPHRTSSEKKTGFVIRNKGER
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaacttaacttatcggaaaatatccttgctgccgtagaaaaagcaggc
tttgttgagccatctccaatccaagaattaacgattcctttggctttggaaggtaaggat
gttatcggacaagcacaaactggaacagggaaaacagctgcctttggcttgccaactttg
aacaaaattgatacaaatcgtaatgttgttcaaaccttggttattgcgccaacacgtgaa
ttggctgttcaaggacaagaagaattgtttcgttttggtcgtgaaaaaggtgtgaaagtc
cgttccgtttacggtgggtcaagcattgaaaaacaaattaaggcacttcgttcaggagct
catattgtagtgggaacaccagggcgtttgcttgacttgattaaacgcaaagctttgaaa
cttgaccatgttgaaacattaatccttgatgaagcagatgaaatgcttaacatgggattc
ttagaagatattgaagccattattagtcgtgttccggaaacacgtcaaacccttcttttc
tcagcgacgatgccagaagctatcaaacgtattggggtgaaatttatgcaaaaccctgaa
cacgttaaagttgctgctaaagaattgactactgatcttgttgaccaatactatattcgc
gttaaagaacaagataaatttgatacaatgacacgtcttatggacgtagaccaacctgaa
ttgtcaattgtctttgggcgtacaaaacgtcgtgtggatgaattgacacgtggattgaaa
ttacgtggctatcgtgccgaaggtattcacggtgaccttgaccaaggtaaacgtctccgt
gttcttcgtgatttcaagaatgacaatattgacatcttggttgcgactgacgttgcagca
cgtggtcttgatatttcaggggtcacacatgtttataactacgatattccacaagaccca
gaaagctatgttcaccgtattggacgtactggacgtgctgggaaacatggtcaatcaatc
actttcgtggcaccaaacgaaatgggatatttgtcaattattgaaaaattgacgaaaaaa
cgcatgaaaggtttgaaaccagcgactgctgatgaagcctttaaagcgaagaaaaaagtt
gcgcttaagaaaattgaacgtgattttgcggatgaagcgattcgtgcaaactttgacaaa
ttcaaaggtgatgccgttaaattggcagcagaatttacaccagaagaattagcattgtac
atcttgaacttgaccgttaaagatccagatacgcttccaaaagtggaaattgctcgtgaa
aaaccattaccatttaaaccatcaggtggtggctttaataaccgcaagggtggtcgtggc
aatggtcgcggtcgtgataatcgccgtggtggacgttcagacagaaaacgtgatgaccga
gataataacagctatcgtgatttcaaacgtacgtcatctaagaacaaacgtgatttccaa
aacaaagataacaaacgcccacatcgcacatcaagcgaaaagaaaacaggatttgttatc
cgtaataaaggggaaagataa
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