Streptococcus pasteurianus: SGPB_1496
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Entry
SGPB_1496 CDS
T01524
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stb
Streptococcus pasteurianus
Pathway
stb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGPB_1496 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stb03019
]
SGPB_1496 (rnr)
03016 Transfer RNA biogenesis [BR:
stb03016
]
SGPB_1496 (rnr)
Enzymes [BR:
stb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SGPB_1496 (rnr)
Messenger RNA biogenesis [BR:
stb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SGPB_1496 (rnr)
Transfer RNA biogenesis [BR:
stb03016
]
Prokaryotic type
tRNA degradation factors
SGPB_1496 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
HTH_DeoR
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAK30526
UniProt:
F5X2L7
LinkDB
All DBs
Position
complement(1559620..1561953)
Genome browser
AA seq
777 aa
AA seq
DB search
MNEKIIAYLEEHGKVNINELAAGLDMAGAEKFPKLIKEISKLESQGKLRFDDYGNLALRK
KIEKKKEITVTGVFRANKAGFGFLAVDENEDDMFVGRNDVGHAVDGDTVEAVVKKPANRL
KGTAAEVRIVGIVERSLKTVVGKFILDDEKPKYAGYIKSKNQKIQQKIYIKKEPVLLDGT
EIIKVDIDKYPTRGYDYFVGHVRDIVGHQGDVGIDVLEVLESMDIKSEFPEDVMAEANAV
SDAPSEKDMVGRVDLRNEITFTIDGADAKDLDDAVHIKLLSNGNFELGVHIADVSYYVTE
GSALNREAVARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSCLMEIDRNGHVVNH
QICQSVIKTTFRMTYSNVNDIIAGDEELIEQYQPIVDSIHHMTALHNILETMRMRRGALN
FDTSEAKIIVNDKGMPVDIVLRQRGIAERMIESFMLAANETVAEHFAKRKLPFIYRIHEE
PKAEKLQKFLDYASIFGVQIHGTANKITQQDLQDFMAKVEGKPGAEVLNMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIREYTQLTDEKIEHFRNAIPELATSS
STLERRAIDAERVVEAMKKAEYMEEYVGQEFDGVVASVVKFGMFIELPNTIEGLVHITTL
PEFYNYNERTLTLQGEKSGKVFRVGQPIKIKLTRADKETGDIDFEYIPSEYDVVEKVKKS
RKDRSGKEKRRPKADNHKGSKSNKPRNRKSSASTSKKSGKKPFYKEVAKKKSRKAKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaaattattgcttatttagaggagcatggaaaagtcaatattaatgaattg
gctgctgggctagacatggctggcgctgaaaaatttccaaagcttatcaaagagatttca
aaattggaaagccaaggaaaactgcgttttgatgactatgggaaccttgctcttcgtaaa
aaaatagagaagaaaaaagaaatcaccgttacgggtgtttttcgtgctaacaaagctggt
tttggttttttagcggttgacgaaaatgaagatgacatgtttgtcggacgtaatgacgtt
ggtcatgcggttgacggagatacggttgaagcggttgttaaaaagccagctaatcgcttg
aaaggtacagctgctgaggttcgcattgtcggcattgttgagcgtagcttaaaaacggtt
gttgggaaatttattcttgatgacgaaaaaccaaaatacgctggttacattaaatccaaa
aatcaaaaaattcaacaaaagatttatatcaagaaagagcctgttctgcttgacggcact
gagattatcaaggttgacattgataaatacccaacacgaggctatgattattttgttggt
catgtgcgtgacatcgttggacaccaaggtgatgttggtattgatgtgcttgaagtcctt
gaatcaatggacatcaaatcagaatttccagaagatgttatggctgaagctaatgcagtt
tcagatgcgccgtctgagaaagacatggttgggcgtgttgatttacgtaatgaaatcacc
tttaccattgatggtgcagatgccaaagacctagatgatgctgttcatattaaattgctc
agcaatggtaattttgagctcggtgttcatattgcggacgtttcatactatgtcacagaa
ggctctgcgcttaatcgtgaagctgttgctcgtgggacatcagtttatgtgactgaccgt
gtagttccaatgctgcctgaacgtttgtcaaatggtatttgttcgttaaatcctaatgtt
gaccgtttgacacaatcatgtttaatggaaattgaccgcaatggtcacgttgttaatcac
caaatttgtcaatcagtcattaagacaactttccgtatgacttacagcaatgtcaatgac
attattgctggtgatgaagaattgattgagcaatatcaaccaatcgttgactctattcat
catatgactgctcttcacaatattcttgaaaccatgcgcatgcgccgcggtgctcttaac
tttgatacgagcgaagccaagattattgttaatgataaaggaatgccagttgatattgtg
cttcgtcaacgtggtattgctgaacgcatgattgaatctttcatgttagcagctaatgaa
acagttgcagagcattttgcaaaacgtaaattgccatttatttaccgtatccatgaagaa
ccaaaagctgaaaaattacaaaaattccttgattatgctagcatttttggcgttcaaatc
catggtacagctaacaaaatcactcaacaagatttgcaagatttcatggcaaaagtagaa
ggtaaaccaggcgcagaagtgttaaacatgatgcttcttcgttcaatgcaacaagcacgt
tattctgaacataatcacggacactatggtttggctgcggagtactatactcacttcaca
agtccaattcgtcgttatcctgatttgcttgttcaccgcatgattcgcgaatacacacaa
ctcactgatgagaaaatcgaacactttagaaatgcgattccagaattggcaacgtcatct
tcaacccttgaacgtcgtgctattgatgctgaacgtgtcgttgaagccatgaaaaaagcc
gaatacatggaagaatacgttggtcaggaatttgacggtgtggttgctagtgtcgtgaaa
tttgggatgttcatcgaattgccaaatacaatcgaaggacttgttcacatcacaactctg
ccagaattttacaattataacgaacgtacattgacccttcaaggtgaaaaatcaggaaaa
gtttttcgtgttggtcaaccgattaaaatcaaattaacacgtgctgataaagaaactggc
gatattgactttgaatacattccaagtgagtatgatgtggtagagaaagttaaaaaatca
cgcaaagaccgttctggtaaagaaaaacgtcgtccaaaagcggataaccacaaaggttca
aaatcaaacaaaccacgaaatcgtaaatcttccgcttcaacttctaaaaagtcaggcaag
aaacctttctacaaagaagttgctaagaaaaaatcacgtaaagctaaaaaataa
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