Streptomyces sp. BRB040: ABDE16_04620
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Entry
ABDE16_04620 CDS
T11010
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
stbr Streptomyces sp. BRB040
Pathway
stbr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABDE16_04620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stbr03400
]
ABDE16_04620
Enzymes [BR:
stbr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ABDE16_04620
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ABDE16_04620
DNA repair and recombination proteins [BR:
stbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABDE16_04620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Zn_ribbon_8
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
XAR09125
UniProt:
A0AAU6XA35
LinkDB
All DBs
Position
complement(996504..997367)
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AA seq
287 aa
AA seq
DB search
MPELPEVEALRDFLTEHLTGREIVRVLPVAISVLKTYDPPLTALEGHRVAGVHRYGKFLD
VETAGGPHLVTHLARAGWLHWKDSLPSGMPRPGKGPLALRVALETGAGFDLTEAGTQKRL
AVYVVADPQQVPGVARLGPDPLADDFDEARFAALLDGERRQLKGALRDQSLIAGVGNAYS
DEILHAAKMSPFKLAASLTDEETARLYAALRGTLTEAVERSRGVAAGRLKAEKKSGLRVH
GRAGEPCPVCGDTVREVSFSDSSLQYCPTCQTGGKPLADRRMSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgcccgaggtcgaggcgctccgcgacttcctgaccgagcacctcaccggc
cgcgagatcgtccgggtcctgcccgtggcgatcagcgtcctcaagacgtacgaccccccg
ctcacggcgctggagggccaccgggtggcgggcgtgcaccggtacggcaagttcctcgac
gtcgagaccgcgggcggcccgcacctggtgacccatctcgcccgggccggctggctgcac
tggaaggacagcctccccagcggcatgccgaggcccggcaagggcccgctcgcgctgcgg
gtggccctggagaccggcgccggcttcgacctgacggaggcgggcacccagaagcggctc
gcggtgtacgtcgtggccgacccgcagcaggtgcccggcgtggcccggctcggccccgac
ccgctcgccgacgacttcgacgaggcgcgcttcgccgccctcctcgacggggagcggcgg
cagctcaagggcgccctgcgcgaccagagcctgatcgcgggcgtgggcaacgcgtacagc
gacgagatcctgcacgccgcgaagatgtccccgttcaaactggccgcctcgctgaccgac
gaggagacagcccggctgtacgcggccctgcgcggcacgctcaccgaggcggtggaacgc
tcgcggggcgtcgccgccgggcgcctgaaggccgagaagaagagcggactgcgggtccac
gggcgggccggggagccctgcccggtgtgcggcgacaccgtccgcgaggtctccttcagc
gactcctcgctccagtactgcccgacctgccagaccggcggcaaaccgctggcggaccgc
aggatgtcccggctgctgaagtga
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