Streptomyces sp. BRB040: ABDE16_06650
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Entry
ABDE16_06650 CDS
T11010
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
stbr Streptomyces sp. BRB040
Pathway
stbr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABDE16_06650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stbr03000
]
ABDE16_06650
03400 DNA repair and recombination proteins [BR:
stbr03400
]
ABDE16_06650
Enzymes [BR:
stbr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
ABDE16_06650
Transcription factors [BR:
stbr03000
]
Prokaryotic type
Helix-turn-helix
AraC family
ABDE16_06650
DNA repair and recombination proteins [BR:
stbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABDE16_06650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
Motif
Other DBs
NCBI-ProteinID:
XAR09499
LinkDB
All DBs
Position
complement(1540316..1541800)
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AA seq
494 aa
AA seq
DB search
MQTGMHTDTERCVRAVRSKDARFDGWFFTAVLTTGIYCRPSCPVVPPKPGNMTFYPSAAA
CQQAGFRACKRCRPDTSPGSPEWNRRADLTARAMRLIADGVVDREGVPGLAARLGYSTRQ
IERQLLAELGAGPLALARAQRAQTARLLIETTPLPMADIAFAAGFSSIRAFNDTVREVYA
LAPSELRTRAPRSRPAAAAPGTLSLRLPFRTPLNPDNLFGHLAATAVPGVEEWRDGAYRR
TLRLPYGHGIVALTPKPDHIACRLTLTDPRDLTVAISRCRRLLDLDADPVAIDDQLRADP
LLAPLVDKAPGRRVPRTVDEAEFAVRAVLGQQVSTAAARTHAARLVTAHGDPVDDPEGGL
THLFPSTEALAAVDPETLAMPRTRRATFTTLVAHLADGSVTPGVESDWAETRARLLDLPG
FGPWTADVIAMRALGDPDAFLPTDLGIRRAAAELGLPSTPAALTARAAAWRPWRAYAVQY
LWATDDHPINFLPV
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgggaatgcacaccgacaccgaacgctgcgtgcgcgccgtgcggtcgaaggac
gcgcgcttcgacggctggttcttcaccgcggtcctgaccaccggcatctactgccggccc
agctgcccggtggtgccgcccaagcccgggaacatgaccttctacccgagcgcggcggcc
tgccagcaggccgggttccgggcgtgcaaacgctgccgcccggacaccagccccggctca
cccgagtggaaccggcgcgccgacctcacggcccgcgccatgcgcctgatcgccgacggc
gtcgtggaccgcgagggagtccccggcctcgccgcccgcctcggctacagcacccggcag
atcgagcgccagctcctcgccgaactgggcgcgggccccctcgccctcgcccgcgcgcag
cgcgcgcagaccgcccggctgctgatcgagaccaccccgctgcccatggcggacatcgcc
ttcgcggccggcttctcctccatccgcgccttcaacgacacggtccgcgaggtctacgcc
ctcgccccgagcgaactgcgcacccgcgcacccaggagccgcccggccgccgcggccccc
ggcaccctctccctccgcctccccttccgcaccccgctcaaccccgacaacctcttcggc
cacctcgccgccaccgccgtacccggcgtggaggagtggcgggacggcgcgtaccgccgc
accctgcgcctcccgtacggtcacggcatcgtggccctcacccccaagcccgaccacatc
gcctgccgcctcaccctcaccgacccgcgcgacctgaccgtcgccatcagccgctgccgg
cgcctgctcgacctggacgccgatccggtggcgatcgacgaccagctgcgcgccgacccg
ctgctcgcgccgctcgtcgacaaggccccgggccgacgggtgccccgcacggtggacgag
gccgagttcgccgtacgggccgtgctcggccagcaggtctcgaccgccgccgcccgcacc
cacgccgcccgcctggtcaccgcgcacggcgacccggtggacgaccccgagggcggcctc
acccacctcttcccgtccaccgaggcgctggcggcggtggacccggagaccctggcgatg
cccaggacccgccgcgccaccttcaccaccctggtcgcccacctggccgacggctcggtc
accccgggcgtcgagagcgactgggccgagacccgcgcccgcctcctcgacctgccgggc
ttcggcccctggaccgccgacgtcatcgccatgcgcgccctcggcgaccccgacgccttc
ctgccgaccgacctcggcatccgccgcgccgccgccgagctgggcctgccctccaccccg
gccgcgctcaccgcccgcgcggcggcctggcggccctggcgggcgtacgccgtccagtac
ctgtgggcgaccgacgaccacccgatcaacttcctgcccgtgtaa
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