Streptomyces sp. BRB040: ABDE16_12105
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Entry
ABDE16_12105 CDS
T11010
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
stbr Streptomyces sp. BRB040
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stbr03021
]
ABDE16_12105
Transcription machinery [BR:
stbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABDE16_12105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
PF0610-like_N
DUF7343
Sigma70_ECF
MarR_2
NirdL-like_HTH
HTH_24
IF2_N
MarR
HTH_3
HTH_Crp_2
HTH_AraC
GerE
HTH_ParB
HTH_28
Motif
Other DBs
NCBI-ProteinID:
XAR10516
LinkDB
All DBs
Position
2772710..2773774
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AA seq
354 aa
AA seq
DB search
MRDEERGTRELPAEGTRSPNEARRTADGIDGIPEQARPHPEDETSPEAVAPVDGQRTGDT
PVPPVRPEERARERATGGTMSEHERHSDGHAPGARGTQGTRHDPHDRSGARLLFAELRTL
TKDSPEYAELRNRLVRMHLPLVEHLARRFRNRGEPLDDLTQVATIGLIKSVDRFDPDRGV
EFSTYATPTVVGEIKRHFRDKGWAVRVPRRLQELRLALTTATAELSQLHGRSPTVHELAE
KLAISEEEVLEGLESANAYSTLSLDVPDTDDESPAVADTLGAEDEALEGVEYRESLKPLL
EDLPPREKRILLLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQLREKLLVEE
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggacgaagagcgcggtacacgggagctgccggccgagggcacacgttctccgaac
gaggcgcgacgcacggcggacggcatcgacggcatccccgagcaggcccggccgcatccg
gaggacgagacctcgcccgaggccgtcgctccggtcgacgggcagcggaccggggacacc
cccgtcccgcccgtccgaccggaggagcgggctcgggaaagggcgacgggcgggacgatg
agcgagcacgagcgacactccgacggccacgcgccgggtgcacggggcacgcagggcaca
cggcacgacccgcacgaccgcagcggtgcgcgcctcctgttcgccgagctgcgcacgctg
acgaaggacagcccggagtacgcggagctgcgcaaccggctggtccgcatgcacctgccg
ctcgtcgagcatctcgcgcgccgcttccgcaaccgcggcgagcccctggacgatctcacc
caggtcgccacgatcgggctgatcaagtcggtcgaccgcttcgacccggaccgcggggtg
gagttctccacgtacgcgacacccacggtcgtcggcgagatcaagcggcacttccgggac
aagggctgggcggtgcgcgtcccgcgccggctccaggagctgcggctggccctgacgacg
gccacggcggagctgtcccagctgcacggccgctcccccacggtccacgagctcgccgag
aagctggcgatctcggaggaggaggtcctggagggcctggagtcggccaacgcgtactcc
acgctgtccctggacgtcccggacaccgacgacgagtccccggccgtcgccgacaccctc
ggcgccgaggacgaggctcttgagggggtcgagtaccgggagtcgctcaagccgctgctc
gaagaccttccgccgcgggagaagcgcatcctgctgctgcgcttcttcggcaacatgacg
cagtcccagatcgcgcaggaggtcgggatctcgcagatgcacgtgtcgcggctgctggcc
cgcacgctggcgcagctgcgggagaagctgctggtcgaggagtag
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