Streptomyces sp. BRB040: ABDE16_18800
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Entry
ABDE16_18800 CDS
T11010
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
stbr Streptomyces sp. BRB040
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stbr03021
]
ABDE16_18800
Transcription machinery [BR:
stbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABDE16_18800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
HTH_3
Sigma70_ECF
MarR
DUF7343
HTH_24
Motif
Other DBs
NCBI-ProteinID:
XAR11762
LinkDB
All DBs
Position
complement(4275767..4276741)
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AA seq
324 aa
AA seq
DB search
MSAEQGSSKVLALAESESAPDSIEALGAVEPVGPVGSIDSVGTVDGAQAGDAVPDLDAVP
AQTLPATEATGAIDTRTLSRSLFLRLAALDADSPERAYVRDTLIELNLPLVRYAAARFRS
RNEPMEDIVQVGTIGLIKAIDRFDCERGVEFPTFAMPTVVGEIKRFFRDTSWSVRVPRRL
QELRLALTKASDELSQKLDRSPTVGELAAVLGVSEEDVVDGLAVGNAYTASSLDSPAPED
DGGEGSLADRLGYEDTALEGVEYRESLKPLLAKLPPRERRIIMLRFFANMTQSQIGEEVG
ISQMHVSRLLTRTLSQLREGLISD
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaacagggcagctcgaaggtgctcgcgctcgcggagagcgagtccgcgccc
gactcgatcgaggcgctcggcgccgtcgagcccgtcggccccgtcggctccatcgactcc
gtcggcaccgtcgacggggctcaggccggcgacgccgtgccggacctcgacgccgtgccg
gcccagacgctcccggccacagaggcaacgggggccatcgacacccgcaccctgtcccgc
tccctgttcctgcggctcgccgccctcgacgcggacagccccgagcgtgcctacgtccgg
gacaccctgatcgagctcaacctcccgctggtgcgctacgccgccgcgcgcttccgctcc
cgcaacgagccgatggaggacatcgtccaggtcggcaccatcggcctgatcaaggcgatc
gaccgcttcgactgcgagcgcggggtcgagttcccgacgttcgccatgccgaccgtcgtc
ggcgagatcaagcggttcttccgcgacacctcgtggtcggtgcgcgtcccgcgccgcctc
caggagctgcgcctggcgctgaccaaggccagcgacgagctctcccagaagctggaccgc
tccccgaccgtcggcgagctggccgccgtgctcggcgtgtccgaggaggacgtcgtcgac
ggcctcgcggtgggcaacgcctacaccgcctcctcgctggactccccggccccggaggac
gacggcggcgagggctcgctggcggaccgtctgggctacgaggacaccgcgctggagggc
gtggagtaccgcgagtccctcaagccgctgctggccaagctgccgccccgggagcggcgg
atcatcatgctgcggttcttcgccaacatgacccagtcgcagatcggcgaggaggtcggc
atctcgcagatgcacgtctcccggctgctcacgcggaccctgtcccagctgcgcgagggc
ctcatctccgactga
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