Streptomyces sp. BRB040: ABDE16_19130 Help Entry ABDE16_19130      CDS       T11010                                  Symbol hrpA Name (GenBank) ATP-dependent RNA helicase HrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism stbr  Streptomyces sp. BRB040 Brite KEGG Orthology (KO) [BR:stbr00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:stbr03019]     ABDE16_19130 (hrpA) Enzymes [BR:stbr01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      ABDE16_19130 (hrpA) Messenger RNA biogenesis [BR:stbr03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      ABDE16_19130 (hrpA) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DUF3418 OB_NTP_bind HA2_C Helicase_C DEAD WHD_HA2 AAA_19 AAA_22 nSTAND3 SLFN-g3_helicase nSTAND_NTPase5 T2SSE NACHT AAA_16 AAA_30 PhoH TsaE NTPase_1 Motif Other DBs NCBI-ProteinID:  XAR11812 LinkDB All DBs Position complement(4335768..4339775) Genome browser AA seq 1335 aa AA seqDB search MSTHPAPALGTLAPRLTELSLRDAHRLGRRLEGARKIRKPEARAAVLAEIETEVAKAEQR IGERRARVPAVSYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICVELGRG VRGMIGHTQPRRIAARTVAERVADELDTPLGETVGWKVRFTDQVNPESTFIKLMTDGILL AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR HFGDAPIVEVSGRTYPVEVRYRPLLEEEGDDADRDQITAITDAVEELMGEGKGDILVFLS GEREIRDTADALEKKKYTRAGGANWHSTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNV AETSLTVPGIKYVIDPGFARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICVR LYSEDDFDARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQ ELGALDPAQKDVRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDP RERPVEKQAQADQQHARFKDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEYLNFLR IREWQDIYTQLRTVAKQMGIHLNDADDAAPDDRVHVSLLAGLLSHVGMKDVKEAGGEGGR STAKNEYVGARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNAKIEPEWVEPLAG HLLKRTYSEPHWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEISRELFIRNALVEG DWRTHHKFFADNRRLLTEVEELEHRARRRDILVDDETLYDFYDQRVPEHVVSGAHFDSWW KHKRHEQPDFLDFEREMLINERAGAVTKDDYPDSWRQGPLKFRVTYQFEPGADADGVTVH VPLQVLNQVTDEGFDWQIPGLREQVVTELIRSLPKPVRRNYVPAPNYAQAFLDRAVPLQE PLTVTMARELKRMVGVPFDAEDFDWAKVPDHLKITFRIVDERRRKLAEDKDLEALKLRLR PKARKALSQAAAATAERSGGESLERSGLTDWTIGTLTRVFETRRAGQPVKAYPALVDDGP KANTVSVRLFDTEAEQAQAMWKGTRRLILRNIPVNPAKFASEKLTNQQKLGLSANPHGSI QALFDDCAMAAADKLIADFGGPAWDEESYRKLYDKVRAEIVDTTVRTVGQVQQVLAAWQA CERRLKAVRSPALLANLQDVRTQLDALVKPGFVTAAGIRRLPDLMRYLVAADRRLQQMPT GVQRDTSRMEKVHEMRDEYAWLLEQMPQGRPVPQQVLDVRWMIEELRVSYFAHALGTAYP VSDKRIVKAIDALAP NT seq 4008 nt NT seq  +upstreamnt  +downstreamnt atgtctacgcatcctgcccccgccctcggcaccctcgccccccggctgaccgagctgtcg ctgcgcgacgcgcaccggctcggccgcaggctggagggtgcgcggaagatccgtaagccg gaggcccgcgccgccgttctcgccgagatcgagacggaggtggccaaggccgagcagcgc atcggtgaacgccgggcgcgggtgccggccgtcagctaccccgagcagctcccggtcagc cagaagaaggacgagatcgcggcggccatccgtgatcaccaggtcgtgatcgtcgcgggt gagacggggtccgggaagaccacgcagatcccgaagatctgtgtcgagctgggccgtggt gtccgcggcatgatcgggcacacccagccccgccggatcgccgcgcgcaccgtcgccgag cgggtcgcggacgagctggacaccccgctcggggagacggtcggctggaaggtccggttc accgaccaggtgaacccggagtccaccttcatcaagctgatgacggacggcatcctgctc gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc cacgagcggtccctcaacatcgacttcctgctgggctacctcgcccagctgctgcccaag cggccggacctgaaggtcgtcatcacctcggcgaccatcgaccccgagcgcttctcgcgc cacttcggcgatgcgccgatcgtcgaggtcagcgggcggacgtatccggtggaggtgcgc taccgcccactcctcgaggaggagggcgacgacgccgaccgggaccagatcacggcgatc accgacgccgtcgaggagctgatgggcgagggcaagggcgacatcctcgtcttcctctcc ggcgagcgggagatccgggacacggcggacgcgctggagaagaagaagtacacccgcgcc ggaggcgctaattggcacagcacggaggtgctgccgctgtacgcgcggctgtcgcacgcc gagcagcaccgcgtcttccagcagcacaccgggcgccggatcgtgctggcgaccaacgtc gccgagacctccctcaccgtgccgggcatcaagtacgtcatcgaccccggcttcgcccgc atctcccgctacagccaccgcaccaaggtccagcggctgcccatcgaggcgatctcgcag gccagcgccaaccagcgcaagggccgctgcggccgtacgtccgacggcatctgcgtccgg ctgtactccgaggacgacttcgacgcccgtccggagttcacggacgcggagatcctgcgg accaacctcgcctccgtcatccttcagatgaccgcggccggcctcggcgacatcgagaag ttcccgttcatcgacccgccggaccaccgcaacatccgcgacggcgtgcagctcctccag gagctgggcgcgctcgacccggcgcagaaggacgtgcgcaagcggctgaccgacaccggc cgcaagctcgcccagctgcccgtcgacccgcgactggcccggatggtgctggaggcggac aagaacggctgtgtccgcgaggtcatggtcatagcggcggcgctgtccatccaggacccg cgtgagcggcccgtggagaagcaggcccaggccgaccagcagcacgcccggttcaaggac gagaccagtgacttcctcgcgttcctgaacctctggcgctatgtgcgcgagcagcagaag gagcgcggctcgtcgtccttccgccggatgtgcaagcaggagtacctgaacttcctgcgc atccgcgagtggcaggacatctacacgcagttgcgcacggtcgccaagcagatgggcatc cacctcaacgacgccgacgacgccgcgcccgacgaccgggtgcacgtgtcgctgctggcc gggctgctctcccacgtcggcatgaaggacgtcaaggaggccggaggggaaggcgggagg agcacggcgaagaacgagtacgtgggcgcgcgcaacgccaagttcgcgatcttccccggc tcggcgctgttcaagaagccgccgcggttcgtgatgtcggcggagctggtggagacctcc cggctctgggcccgcgtcaacgcgaagatcgagcccgagtgggtggagccgctcgccggg cacctcctcaagcgcacctacagcgagccgcactgggagaaggaccaggcggcggtgatg gcgtacgagaaggtcacgctgtacggcgtaccgatcgtggcgcagcgcaaggtgaactac gggcggatcgatccggagatcagccgcgagctgttcatccgcaacgccctggtggagggc gactggcgcacccaccacaagttcttcgccgacaaccgccggctgctgaccgaggtcgag gagctggagcaccgggccaggcgccgggacatcctggtcgacgacgagacgctgtacgac ttctacgaccagcgggtgcccgaacacgtcgtctccggtgcgcacttcgactcgtggtgg aagcacaagcggcacgagcagcccgacttcctcgacttcgagcgcgagatgctcatcaac gagcgggctggggcggtcaccaaggacgactacccggactcctggcggcaggggccgctg aagttccgggtgacgtaccagttcgagccgggcgcggacgccgacggcgtgaccgtgcac gtgccgctccaggtgctcaaccaggtgacggacgagggcttcgactggcagatcccgggc ctgcgcgagcaggtcgtcacggagctgatccgctccctgcccaagccggtccgccgcaac tacgtgcccgcgccgaactacgcccaggccttcctcgaccgtgccgtgccccttcaggag ccgctgacggtgaccatggcgcgggagctgaagcgcatggtgggggtgcccttcgacgcc gaggacttcgactgggcgaaggtccccgaccacctgaagatcacgttccggatcgtcgac gagcggcgccgcaagctggccgaggacaaggacctggaggcgctgaagctccggctgcgc ccgaaggcgcgcaaggcgctgtcgcaggccgcggccgccaccgcggagcgcagcggcggc gagtccctggagcgctccgggctgacggactggacgatcggcacgctgacccgggtcttc gagacccgccgggccggccagccggtgaaggcgtacccggcgctggtggacgacgggccg aaggcgaacaccgtctccgtccggctcttcgacaccgaggccgagcaggcgcaggcgatg tggaagggcacgcgccggctgatcctgcgcaacatcccggtcaacccggcgaagttcgcg tccgaaaagctgaccaaccagcagaagctgggcctgtccgcgaacccgcacggttcgatc caggccctgttcgacgactgcgccatggcggcggcggacaagctgatcgcggacttcggc ggcccggcgtgggacgaggagtcgtaccgcaagctctacgacaaggtccgcgcggagatc gtcgacacgaccgtccgcacggtgggccaggtgcagcaggtgctggcggcctggcaggcg tgcgagcgccgcctgaaggcggtgcgcagcccggcgctgctggcgaacctccaggacgtc cggacacagctggacgcgctggtgaagccgggcttcgtcacggcggcggggatccggcgg ctgccggacctgatgcgctacctggtcgcggcggaccggcggcttcagcagatgccgacc ggggtccagcgcgacacctcccgcatggagaaggtccacgagatgcgggacgagtacgcg tggctgctcgagcagatgccccagggccggcccgtgccgcagcaggtcctcgacgtccgc tggatgatcgaggagctgcgggtcagctacttcgcgcacgcgctgggcacggcgtacccc gtctccgacaagcggatcgtgaaggccatcgacgccctcgcgccgtga

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