Streptomyces sp. BRB040: ABDE16_28155
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Entry
ABDE16_28155 CDS
T11010
Name
(GenBank) DEDDh family exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
stbr Streptomyces sp. BRB040
Pathway
stbr03030
DNA replication
stbr03430
Mismatch repair
stbr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABDE16_28155
03430 Mismatch repair
ABDE16_28155
03440 Homologous recombination
ABDE16_28155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stbr03032
]
ABDE16_28155
03400 DNA repair and recombination proteins [BR:
stbr03400
]
ABDE16_28155
Enzymes [BR:
stbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABDE16_28155
DNA replication proteins [BR:
stbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABDE16_28155
DNA repair and recombination proteins [BR:
stbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABDE16_28155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
Rv2179c-like
PTCB-BRCT
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
XAR13491
LinkDB
All DBs
Position
complement(6331147..6332139)
Genome browser
AA seq
330 aa
AA seq
DB search
MLEDRTTAAPSATAWPTAYPQGYAVVDVETTGLARDDRIISAAVYRLDARGEVEDHWYTL
VNPQRDPGPVWIHGLTNDVLRDAPLFPDVAEEFAARLDGRVLVAHNAVFDWQMIAREYAR
AEREAPVRQRLCTIALSKALDLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPS
LVAAAAGGVRLPLHECRPLTEWSDRPAPRIGQQAGYGSYRPSSWRPSRKRPACPHPNPGR
YEVGKKLKQGMRVAFSGDTSVERDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKV
VKARQFGTPVVDEAAFGQLLADVEPADAAS
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagaccgcacgaccgcagcgccgtccgccacggcgtggccgaccgcgtatccg
caggggtacgcggtcgtcgacgtggagaccaccggcctggcccgcgacgaccgcatcatc
tcggcggccgtctaccggctggacgcccgcggcgaggtcgaggaccactggtacaccctg
gtcaatccgcagcgcgaccccgggccggtgtggatacacggtctgacgaacgacgtgctc
cgggacgcgcccctcttcccggacgtcgccgaggagttcgcggcccggctggacgggcgg
gtcctcgtcgcgcacaacgccgtcttcgactggcagatgatcgcccgtgagtacgcgcgc
gccgagcgcgaggcgccggtgcggcaacggctgtgcaccatcgccctgtcgaaggcgctg
gacctgccgctgcccaaccacaagctggagtcgctggccgcgcacttcggcgtcgtgcag
cagcgggcgcaccacgcgctggacgacgcgcgggtgctggcggaggcgttccggccgagc
ctggtggccgcggcggcggggggcgtacggctgccgctgcacgagtgccggccgctgacc
gagtggtcggaccggcccgctccccggatcgggcagcaggcgggctacgggagctaccgg
ccgagcagttggcgcccctcccgcaaaaggcccgcatgcccccatcccaacccgggccgg
tacgaagtgggcaaaaagctcaagcagggcatgcgggtcgccttctcgggtgacacctcc
gtcgagcgggacctgctggaggaccgtgccgtcgaggcggggctgcacgtcgcgaccagc
ctgtcccggctgaccagcctgctggtcaccaacgacccggactcgggcacctccaaggtg
gtcaaggcccggcagttcggcacgccggtggtggacgaggccgccttcgggcagctgctc
gcggacgtcgaacccgcggacgccgcgtcctga
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