Streptomyces sp. BRB040: ABDE16_34250
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Entry
ABDE16_34250 CDS
T11010
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stbr Streptomyces sp. BRB040
Pathway
stbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABDE16_34250 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stbr03021
]
ABDE16_34250 (rho)
03019 Messenger RNA biogenesis [BR:
stbr03019
]
ABDE16_34250 (rho)
Transcription machinery [BR:
stbr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABDE16_34250 (rho)
Messenger RNA biogenesis [BR:
stbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABDE16_34250 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
AAA_22
NACHT
AAA
Spore_III_AA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
XAR14625
LinkDB
All DBs
Position
complement(7655690..7656829)
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AA seq
379 aa
AA seq
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MTTTLEHPPVRQSPAETASGVLDLEAGGKGRLRGESLRPEPSDLALSPALIRRHGLRKGD
LVEGVRGDRRTLTDVVRVNGRTPDGRGGRRHFADLTPLHPHERLRLEHPAAGLTGRVADL
MTPVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPEARLMVVLLDERPEEVTDMRRSVR
GEVYASTFDQSAKQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRT
LSGGVDAGALLGPKRFFGAARTAEEGGSLTILATALVETGSRADDFYFEELKSTGNMELR
LSRELASRRVFPAVDLTGSGTRREELLLSAAETTAVRGLRRVLGARDGQSGPETLLERLR
RTPDNATFLRQVQPTLPAG
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacacccccctgtacggcagtccccggccgagaccgcgagcggc
gtcctcgacctcgaagcgggcggcaaggggcgcctgcggggcgagagcctgcggccggag
ccctccgacctcgccctctcccccgccctgatccgccggcacggactgcgcaagggcgac
ctcgtcgagggcgtgcgcggcgaccggcgcaccctgaccgacgtcgtgcgcgtcaacggc
cgtacgcccgacgggcgcggcggccgacggcacttcgccgacctgaccccgctgcacccg
cacgagcggctgcggctcgaacacccggcggccggcctcaccggacgcgtcgccgacctg
atgacccccgtcggcaagggccagcgcggcctgatcgtcgcgccgccgaagaccggcaag
accgtcctcctccagcagatcgccgccgccgtggccggcaaccaccccgaggcccggctg
atggtggtgctgctcgacgaacgccccgaggaggtcaccgacatgcggcgctcggtgcgg
ggcgaggtgtatgcctctaccttcgaccagagcgccaagcagcacatcgcgctcgccgag
ctggtgatcgagcgggccaagcggctcgtcgaggccggggaggacgtcgtcatcctcctg
gactccctcacccggctgtgcagggcgcacaacaacgccgcctcgtccggcggccgcacg
ctcagcggcggcgtcgacgccggggcactgctcgggcccaagcggttcttcggcgcggcc
cgcacggcggaggagggcggctccctcaccatcctcgccacggccctggtcgagaccggc
tcgcgcgccgacgacttctacttcgaggagctcaagagcaccggcaacatggagctgcgg
ctgagccgggaactcgcctcccgccgggtcttcccggccgtggacctgaccgggtccggc
acccggcgcgaggagctgctactgtccgccgccgagacgaccgccgtgcgcgggctgcgc
cgggtgctgggtgcgcgggacgggcagtccggcccggagaccctgctggagcggctgcgc
cgcacgccggacaacgcgaccttcctgcgacaggtacagcccacgctgcccgccggctga
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