Streptococcus thermophilus CNRZ1066: str0625
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Entry
str0625 CDS
T00212
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stc
Streptococcus thermophilus CNRZ1066
Pathway
stc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
str0625 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stc03019
]
str0625 (rnr)
03016 Transfer RNA biogenesis [BR:
stc03016
]
str0625 (rnr)
Enzymes [BR:
stc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
str0625 (rnr)
Messenger RNA biogenesis [BR:
stc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
str0625 (rnr)
Transfer RNA biogenesis [BR:
stc03016
]
Prokaryotic type
tRNA degradation factors
str0625 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1_RRP5
RNase_II_C_S1
TnpV
Motif
Other DBs
NCBI-ProteinID:
AAV62221
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All DBs
Position
585632..588085
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AA seq
817 aa
AA seq
DB search
MKESIINYLKEHGKSSVNDIAHALNHAGGEKFPQLIKVISAMERKRQLRFNRDGSVSLRP
KKEHPNQVTVEGVFHANKNGFGFLHVDDSEDDMFIGRNDVGHAIDGDTVAAVIKKPADRL
RGTMAEARVVEIVERSLKTVVGKFILNDEKEPYVGYIKSKNQKIQQPIYIKKGPVALEGT
EIIKVDIEKYPNRHHDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAV
PDAPSQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTE
GSALNREAAARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTLSAIMEITPKGKVINH
KICQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALN
FDTSEARILVNDKGMPVDIVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEE
PKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQAR
YSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATS
SSTLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTVEGLVHITT
LPEFYNYNERTMTLQGEKSGKTFRVGQPIRVKLIRADKETGDIDFQYLPSEYDITEKVDH
KARQEREEKAKSFRNRGPRRDRQNGDFESRGKRVNKRSGQDSSGYKGSYDQKRKSSKKPD
KRKNQNRPHNDNKGRESSRRKKKENKPFYKDVAKKRK
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatctattataaattatttgaaagagcatgggaaatccagtgtaaatgacatt
gcccacgctcttaatcacgctggcggtgaaaagttcccacagcttatcaaagtcatatca
gctatggaaaggaagagacagttgcgctttaatcgagacggctctgtatccttacgtcct
aagaaagaacatcccaatcaggttactgtagagggtgtttttcatgccaataagaatggt
tttggtttcttacatgtcgatgacagtgaggatgacatgtttattggtcgtaatgacgtt
ggccatgccattgatggtgacactgttgccgcagttattaagaagccagcagatcgtttg
cgtgggacaatggctgaagcaagagttgttgaaattgtcgaacgctctcttaaaacggtt
gtcgggaaatttatcctcaatgacgagaaagaaccttatgtaggttacattaagtctaag
aatcaaaaaattcagcaaccaatctatatcaagaaaggaccagttgctcttgaggggact
gagattattaaggttgatattgaaaaataccctaaccgccatcacgattattttgtagga
agtgttcgagatattattggtcatcaaggagatgctggtattgatgtcttggaagttttg
gaatcaatggatattgtttcggagtttccagaagatgttatggctgaagcagaggctgtg
ccggatgcacctagtcaagaagatctaattggtcgtgttgaccttcgtcaagaagtgacc
ttcaccattgatggagctgatgccaaggacttggatgatgcagttcatattaaacgttta
ccaaatggtaactatgagctaggtgtccacattgcagatgtgtcttattatgtcacagag
ggttctgccctcaaccgtgaggctgcagcgcgtggtacttctgtttatgtgacagaccgc
gtggttccaatgttgcctgagcgtctttcaaatggtatttgttctctaaatcccaatgtt
gaccgcttgactctgtcagctattatggagattactccaaaaggcaaggtgattaatcat
aagatttgccaatctgtaattaagacaaccttccgtatgacctatagtgatgtcaatgaa
atgttggctggaaatccagaaaagattgaacagtttaagcctatcatggattctgtgtca
gctatggcagaacttcataagattttagaagatatgcgcgaacgtcgtggtgcccttaac
tttgatacatctgaagctcgtatcttggttaatgataagggaatgccagttgatatcgtg
gtgcgtgaacgtgggacggctgagcgaatgattgagtcctttatgttggctgccaatgaa
tgtgtggcagagcatttcgctaaggctaagttgccatttatttaccgtattcacgaagag
cctaaagcggagaaattgcaacgctttatggattatgcttctatctttggtattcaaatc
aaaggaacagctaataagatggatcagctagacttacaagatttcatggcgcgagttcaa
ggcaaacctggagcagaagtcatgaatatgatgttgcttcgttcaatgcaacaagctcgt
tattcagaacacaatcatgggcactatggacttgcggctcagtattatactcacttcacc
agtccgatccgtcgttacccagaccttttggttcaccgaatgattcgtgagtacaccaac
aatatgtctcaagaaacgcgtgaacactttgaagaggttattccagagttagctacttca
tcttcaacccttgagcgtcgtgctattgacgctgaacgtgtcgttgaagccatgaaaaaa
gcagagtacatggaagagtttgttggtcaagaattcgatggtattgtcggaagtgtggtt
aaattcggtatgtttgtggaattgccaaataccgttgaaggtttggttcatatcacaaca
cttccagaattctacaattacaatgaacgcaccatgacccttcagggtgaaaaatctggt
aagactttccgtgttggccaacctattcgagttaagttaattcgtgcagataaggagact
ggagacattgatttccaataccttccaagtgagtacgatatcactgaaaaagtagatcac
aaggctcgtcaggaacgtgaagagaaggctaagtccttccgtaatagaggaccacgccga
gatcgtcaaaatggtgatttcgaaagtcgtggtaaacgtgtaaataagcgtagcggtcaa
gatagtagtggttacaaaggctcttatgatcaaaagcgtaagtcatctaagaaaccagac
aagcgtaagaatcaaaaccgtcctcataatgataataagggacgtgagagtagtcgtcgt
aagaaaaaagaaaacaaacctttctacaaggacgttgctaaaaaacgaaaatag
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