Streptomyces sp. CMC78: SCMC78_14950
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Entry
SCMC78_14950 CDS
T11197
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
stcm Streptomyces sp. CMC78
Pathway
stcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCMC78_14950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stcm03019
]
SCMC78_14950
03400 DNA repair and recombination proteins [BR:
stcm03400
]
SCMC78_14950
Enzymes [BR:
stcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCMC78_14950
Messenger RNA biogenesis [BR:
stcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCMC78_14950
DNA repair and recombination proteins [BR:
stcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCMC78_14950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
BFP51688
UniProt:
A0AB33K909
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All DBs
Position
1634017..1636128
Genome browser
AA seq
703 aa
AA seq
DB search
MGDATGTAVLREDQWVAIEALVADKRRALVVQRTGWGKSAVYFVATSLLRAQGAGPTVIV
SPLLALMRNQVAAAARAGISARTINSSNTEEWESVQAEVAAGEVDVLLVSPERLNNPDFR
DQVLPKLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADLPTGVPVLATTATANARV
TADVAEQLGTGAGTDALVLRGPLDRESLSLSVLRLPGAAHRLAWLGDHIGELPGSGIIYT
LTVAAAEEITAYLRQNGHAVASYTGRTENAERQQAEDDLLANRVKALVATSALGMGFDKP
DLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGKEDEAIWQYFASVAFPPEEQVR
RTLDVLARAERPVSLPALEPLVDLRRTRLETMLKVLDVDGAVKRVKGGWISTGAPWVYDA
ERYAWVARQREAEQQAMRDYASTTACRMEFLRLRLDDEEAAPCGRCDNCAGARFDDKVST
AALDGARDELGRPGVEVDPRKMWPTGLPAVGIDLKGRIPAGELSFTGRALGRLSDIGWGN
RLRPMLATQAPDGPVPDDVTNAVVTVLADWAKGPGGWASGSADAAPRPVGVVTVASRRRP
QLVGSLGLRISEIGRMPLLGTVSYAPGAEDVMMSQTNSAQRVRALHEALVVEPELAEALA
AADGPVLLVDDLSDTGWTLAVAGRLLRRAGAQGVFPLVLAVQG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgatgccaccggtacggccgtgctgcgcgaggaccagtgggtggccatcgaggcg
ctcgtcgccgacaaacgcagagccctggtcgtgcagcgcaccggctggggcaagtccgcc
gtctacttcgtggcgacctcgctgctccgtgcgcagggcgccggcccgacggtgatcgtc
tcgccgctgctggccctgatgcgcaaccaggtcgcggcggcggcccgggccgggatcagc
gcccgcacgatcaactcgtccaacacggaggagtgggagagcgtccaggccgaggtggcg
gcgggcgaggtcgacgtcctcctcgtgagcccggaacgcctcaacaatcccgacttccgc
gaccaggtgctgccgaaactggcggcggcgaccgggcttctggtggtcgacgaggcccac
tgcatctccgactgggggcacgacttccggcccgactaccggcggctgcggacgatgctc
gccgatctgccgacgggggtcccggtgctcgccaccaccgccacggccaacgcccgggtg
acggcggacgtcgcggaacagctgggcaccggcgccggcaccgacgcgctggtgctgcga
ggcccgctggaccgggagagcctgagcctgagcgtgctgcgactgccgggcgcggcacac
cggctggcctggctgggcgaccacatcggcgagcttcccggctcggggatcatctatacg
ctgaccgtggcggcggccgaggagatcacggcctatctgcgtcagaacgggcacgcggtg
gcctcgtacaccgggcggaccgagaacgccgagcggcagcaggccgaggacgatctgctg
gccaaccgggtcaaggccctggtcgccacgtccgcgctgggcatgggattcgacaagccc
gacctcggcttcgtcgtgcacctgggctcgccctcctcccccatcgcctactaccagcag
gtcgggcgtgcggggcgcggtgtcgagcacgccgaggtgctgctgctccccggcaaggag
gacgaggcgatctggcagtacttcgcgtccgtcgccttcccgccggaggagcaggtgcgg
cgcaccctggacgttctggcccgcgcggagcggccggtctccctcccggcgctggagccc
ctggtcgatctgcggcggaccaggctggagacgatgctcaaggtgctggacgtcgacggt
gcggtgaagcgcgtcaagggcggctggatctccacgggcgccccttgggtctacgacgcc
gagcgttatgcctgggtcgcccggcagcgggaggccgagcagcaggccatgcgtgactac
gcctcgacgacggcgtgccggatggagttcctgcggctgcgcctcgacgacgaggaggcc
gcgccctgcggacgctgtgacaactgcgcgggcgcccggttcgacgacaaggtctccacc
gccgccctggacggagcgcgcgacgaactgggccggcccggtgtcgaggtggatccccgc
aagatgtggcccaccggcctgcccgcggtgggcatcgatctcaaggggcgcatcccggcg
ggagagctgtccttcaccggccgggcgctcggccggctctccgacatcggctggggcaac
cggctgcgtcccatgctcgcgacacaggctccggacggcccggtgccggacgatgtcacg
aacgccgtggtcaccgtgctcgccgactgggcgaaggggccgggcggttgggcctccggt
tcggcggacgccgctccgaggccggtcggtgtggtgaccgtcgcctcgcgccgcagaccg
caactggtcgggtcgctcggcctgcgcatctccgagatcggccggatgcccctgctcggg
acggtctcctacgctccgggcgccgaggacgtgatgatgtcgcagaccaacagcgcgcag
cgggtacgggcgttgcacgaggcgctggtcgtggagccggagctggcggaggcgttggcg
gccgcggacggccccgttctgctggtcgacgatctttcggacaccggctggaccctggcc
gtggccgggcggctgctccggcgggccggagcacagggggtgtttccgctggtcctcgcg
gttcaggggtga
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