Streptomyces sp. CMC78: SCMC78_16560
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Entry
SCMC78_16560 CDS
T11197
Symbol
whiG
Name
(GenBank) RNA polymerase sigma factor WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
stcm Streptomyces sp. CMC78
Pathway
stcm02020
Two-component system
stcm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SCMC78_16560 (whiG)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SCMC78_16560 (whiG)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stcm03021
]
SCMC78_16560 (whiG)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
stcm02035
]
SCMC78_16560 (whiG)
Transcription machinery [BR:
stcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SCMC78_16560 (whiG)
Bacterial motility proteins [BR:
stcm02035
]
Flagellar system
Flagellar assembly proteins
Stator
SCMC78_16560 (whiG)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_ECF
UPF0122
HTH_31
Motif
Other DBs
NCBI-ProteinID:
BFP51849
UniProt:
A0AB33KEG6
LinkDB
All DBs
Position
complement(1832630..1833406)
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AA seq
258 aa
AA seq
DB search
MRPPAPSSLDELWRSYKTTGDERLREQLILHYSPLVKYVAGRVSVGLPSNVEQADFVSSG
VFGLIDAIEKFDIERAIKFETYAITRIRGAMIDELRALDWIPRSVRQKARNVERAYATLE
ARFRRTPSEAEVASEMGIALEELHAVFSQLSLANVVALEELLHVGGEGGDRLSLMDTLED
TAADDPVEVAEDRELRRLLARAINTLPDREKTVVTLYYYEGLTLAEIGNVLGVTESRVSQ
IHTKSVLQLRAKLADAGR
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
gtgcgccctcccgccccctcctccctcgacgagttgtggcgttcttacaagaccacgggc
gacgagcgactgcgggagcagctgatcctgcactactcgccgctcgtgaagtacgtcgcg
ggccgggtgagcgtggggctgccgtccaacgtcgagcaggccgacttcgtctcctccggg
gtcttcggactgatcgacgccatcgagaagttcgacatcgaacgggccatcaagttcgag
acgtacgcgatcacccggatccgcggcgcgatgatcgacgaactccgggcgctggactgg
atcccacggtccgtccggcagaaggcgcggaacgtggagcgcgcctacgccacgctggag
gcgcggttccggcgcacgccgtcggaggccgaggtggcctcggagatgggcatcgcgctg
gaggaactgcacgcggttttcagccagttgtcgctggcgaatgtggtcgccctggaggag
ttgctgcacgtcggcggcgagggcggcgaccggctgagcctgatggacacgctggaggac
accgccgccgacgacccggtggaggtcgccgaggaccgtgagctgagacggctgctcgcg
cgggccatcaacaccctccccgaccgtgagaagaccgtggtgaccctctactactacgaa
ggtctcaccctcgcggagatcggcaacgtcctcggggtgaccgagagccgggtcagccag
atccacaccaagtccgtgctgcagctccgcgcgaagctcgccgacgcgggccgctga
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