Streptomyces sp. CMC78: SCMC78_19900
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Entry
SCMC78_19900 CDS
T11197
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
stcm Streptomyces sp. CMC78
Pathway
stcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCMC78_19900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stcm03021
]
SCMC78_19900
03019 Messenger RNA biogenesis [BR:
stcm03019
]
SCMC78_19900
Transcription machinery [BR:
stcm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCMC78_19900
Messenger RNA biogenesis [BR:
stcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCMC78_19900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BFP52183
UniProt:
A0AB33KAJ8
LinkDB
All DBs
Position
complement(2208279..2210309)
Genome browser
AA seq
676 aa
AA seq
DB search
MSDTTDLMGVTADKNVDSAAPAEGAATGTTARRRRSGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGGSAAPKASSKAAAAPADAESKPKRRATSKARTGDEGAAAAE
KDAAQQQIDIPGQPASDDQPAGERRRRRATAQAGSPDTKTEAKTEVKAKTEPQAEQKTEE
RAEPKGDAKAEAAADTAEGRRGDRRDRGERGERGERGDRRERQRDRRGKGDDQGQQGGGG
QRPQRQGQGQQNRDNGPQDDFDDEAGGRRGRRGRYRDRRGRRGRDDFAGDVQVADDDVLI
PVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKDGERREK
FNALVRLDSVNGMAPESGRGRPEFQKLTPLYPQDRLRLETDSNILTTRIIDLVAPIGKGQ
RGLIVAPPKTGKTMILQAIANAITVNSPECHLMVVLVDERPEEVTDMQRSVKGEVISSTF
DRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDST
ALYPPKRFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLDRKLSDK
RIFPAVDVDASSTRKEEILLGTDELAVVWKLRRVLHALDQQQAIELLLDRMKKTQSNAEF
LLQIQKTTPGSGNGND
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacaagaacgtcgacagcgccgcg
cccgccgaaggtgctgccactggcaccaccgcacggcgccgccgctccggcaccggcctc
gagggcatggtcctggccgagctgcagcaggtcgcgtccggcctcggcatcaggggcact
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcgggtggcgga
tccgccgcgcccaaggcctcctccaaggccgcggcggcccccgccgatgcggagagcaag
ccgaagcgccgcgcgacctccaaggcgcgcaccggggacgagggcgccgccgccgccgag
aaggacgcggcccagcagcagatcgacatccccggtcagccggccagcgacgaccagccc
gcgggcgagcgtcgtcgccgccgtgccaccgcgcaggcgggcagccccgacaccaagacc
gaggcgaagaccgaggtcaaggcgaagacggagccccaggccgagcagaagaccgaggag
cgcgccgagccgaagggcgacgccaaggccgaggccgccgccgacacggccgagggccgt
cgtggcgaccgtcgtgaccgcggtgagcggggcgagcgcggtgagcgtggcgaccgccgc
gagcgtcagcgcgaccgccggggcaagggcgacgaccagggccagcagggcggcggcggg
cagcgcccgcagcgccagggtcagggccagcagaaccgtgacaacggtccgcaggacgac
ttcgacgacgaggcgggcggccgtcgcggccgtcgtggccgctaccgcgaccgccggggc
cgtcgcgggcgcgacgacttcgccggcgatgtgcaggtggccgacgacgacgtcctgatc
cccgtcgcgggcatcctggacatcctcgacaactacgcgttcatccggacctccggctac
ctcccgggcccgaacgacgtgtacgtctcgctcgcccaggtccgcaagaacggcctgcgc
aagggtgaccacgtcaccggcgcggtgcgtcagcccaaggacggcgagcggcgcgagaag
ttcaacgcgctggtccgcctcgactcggtcaacggcatggcccccgagtccggccgcggc
cgcccggagttccagaagctgaccccgctctacccgcaggaccggctccgtctggagacc
gactccaacatcctgacgacgcggatcatcgacctggtggccccgatcggcaagggccag
cgcggactcatcgtggccccgccgaagaccggcaagaccatgatcctgcaggccatcgcc
aacgcgatcacggtcaacagccccgagtgccacctgatggtcgtcctggtcgacgagcgt
ccggaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcatctcctcgaccttc
gaccgccccgccgaggaccacaccaccgtcgccgagctggccatcgagcgcgccaagcgc
ctcgtggagctgggtcacgacgtggtcgtcctgctcgactcgatcacccgactgggccgc
gcgtacaacctcgcggcgccggcctccggccgcatcctctccggtggtgtcgactcgacc
gcgctgtaccccccgaagcgcttcttcggcgcggcgcgcaacatcgaggacggcggctcg
ctgaccatcctggccaccgcgctcgtcgagaccggctcgcgcatggacgaggtgatcttc
gaggagttcaagggcaccggcaacatggagctcaagctcgaccggaagctctcggacaag
cgcatcttcccggcggtggacgtcgacgcgtcctccacccgtaaggaagagatcctgctc
ggcaccgacgagctggcggtcgtctggaagctgcgccgggtgctgcacgcgctcgaccag
cagcaggcgatcgagcttctcctggaccggatgaagaagacccagtccaacgcggagttc
ctgctccagatccagaagacgacgccgggcagcggaaacggcaacgactga
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