Streptomyces sp. CMC78: SCMC78_20980
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Entry
SCMC78_20980 CDS
T11197
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
stcm Streptomyces sp. CMC78
Brite
KEGG Orthology (KO) [BR:
stcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stcm03021
]
SCMC78_20980
Transcription machinery [BR:
stcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SCMC78_20980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
MarR_2
PF0610-like_N
HTH_24
HTH_10
HTH_AsnC-type
HTH_3
DUF7343
Sigma70_ECF
MarR
HTH_Crp_2
NirdL-like_HTH
IF2_N
DUF8073_C
HTH_ParB
GerE
HTH_AraC
HTH_28
DUF4423
Motif
Other DBs
NCBI-ProteinID:
BFP52291
UniProt:
A0AB33KC85
LinkDB
All DBs
Position
2327167..2328096
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AA seq
309 aa
AA seq
DB search
MRDETIRSGVVRPAGIPEQQARPHPVDGADGSEGFDVAVEQQSQAERAGQMSEHGHHDPH
DRSGARALFFELRELPDGSAEKAELRNRLVRMHLPLVEHLARRFRNRGEPLDDLTQVATI
GLIKSVDRFDPDRGVEFSTYATPTVVGEIKRHFRDKGWAVRVPRRLQELRLSLTTATAEL
SQQHGRSPTVHELAERLGISEEEVLEGLESANAYSTLSLDVPDTDDESPAVADTLGSEDE
ALEGVEYRESLKPLLEDLPPREKRILLLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQ
LRERLLVEE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggacgagacgatccgatccggggtggtgcgcccagcaggcatcccggagcaacag
gcccggccgcatccggtggacggagcggacgggtccgagggcttcgacgtcgcggtggag
cagcagtcgcaggcagagcgggcgggccagatgagcgagcacgggcaccacgatccacac
gaccgcagcggggcccgggccctcttcttcgagctgcgggaactgcccgacggttcggcg
gagaaggccgagctgcgcaaccggctggtgcggatgcacctgccgctggtggagcatctg
gcgcgccgcttccgcaaccgcggcgagccgctggacgacctgacccaggtcgccacgatc
gggctgatcaagtccgtggaccggttcgacccggaccggggggtggagttctcgacgtac
gccacccccacggtggtcggcgagatcaagcgccacttccgggacaagggctgggcggtg
cgggtgccgcgccgcctccaggagctgcgtctttcgctgaccacggccactgcggagctc
tcccagcagcacggccgctcgccgacggtgcacgagctggccgagcggctgggcatctcc
gaggaggaggtgctggagggtctggagtcggccaacgcgtacagcacgctctcgctggac
gtgccggacacggacgacgagtcgccggcggtcgcggacacgctgggctcggaggacgag
gcgctggagggcgtggagtaccgggagtcgctcaaaccgctcctggaggacctgccgccg
cgcgagaagcgcatcctgctgctgcgcttcttcgggaacatgacccagtcgcagatcgcc
caggaggtcggcatctcgcagatgcacgtctcgcggctgctggcccgcaccctggcgcag
ctccgcgagcggctgctcgtcgaggagtga
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