Streptomyces sp. CMC78: SCMC78_27700
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Entry
SCMC78_27700 CDS
T11197
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
stcm Streptomyces sp. CMC78
Pathway
stcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCMC78_27700 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stcm03019
]
SCMC78_27700 (recQ)
03400 DNA repair and recombination proteins [BR:
stcm03400
]
SCMC78_27700 (recQ)
Enzymes [BR:
stcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCMC78_27700 (recQ)
Messenger RNA biogenesis [BR:
stcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCMC78_27700 (recQ)
DNA repair and recombination proteins [BR:
stcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCMC78_27700 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
BFP52963
UniProt:
A0AB33KCT8
LinkDB
All DBs
Position
complement(3056497..3058545)
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AA seq
682 aa
AA seq
DB search
MTMDETTGTVTGTGTDTGGESEAQRTLHRVFGYESFRGEQGAVIEHVVAGGDAVVLMPTG
GGKSLCYQIPSLVRRGTGIVVSPLIALMQDQVDALRALGVRAGFMNSTQDFDERRSMEAQ
FLAGELDVLYLAPERLRLDSTLSLLARGEISVFAIDEAHCVAQWGHDFRPDYLALSVLGE
RWPDVPRIALTATATNATHEEITRRLGMPDAKHFVASFDRPNIQYRIVPKSDSKKQLLTF
LKEEHAGDAGIVYCLSRNSTEKIAEYLSRNGVRAVPYHAGLDAATRADHQARFLREEGLV
VVATIAFGMGIDKPDVRFVAHVDLPKSVEGYYQETGRAGRDGEPSTAWMAYGLQDVVQQR
KLIQGGEGDEAHRRRAAAHLDSMLALCETVQCRRSQLLTYFGQEPTAAACGNCDTCLTPP
ETWDGTVVSQKLLSTVVRLKRERNQKFGAGQIIDILLGRKTAKVIQFDHDQLSVFGIGEE
LAEAEWRGVVRQLLAQGLLAVEGEYGTLVLTDESATVLGRERDVLLRKEPKKPTSRSSSS
AGGAKGRGKAAAADLPESAVPVFEALRAWRGATAKEQGVPAYVIFHDATLREIATLHPAS
LAELGGVSGLGEKKLATYGEGVLEVLAQTSPGAAPEAPASQAPAPAPVAPAPHTPPPART
KAPAPQHSDPEFGWDEEPPEYE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgaccatggatgagaccaccgggacggtgaccggcaccggcaccgacacgggcggcgag
agcgaggcgcagcggacgctgcaccgcgtcttcgggtacgagtcgttccgcggcgagcag
ggcgcggtcatcgagcatgtggtggcgggcggcgacgcggtcgtgctcatgcccaccggc
ggcggaaagtccctctgctaccagatcccgtccctggtccgccggggcaccggtatcgtc
gtctcgccgctgatcgccctcatgcaggaccaggtcgacgccctgcgggcgctcggcgtc
cgggccggcttcatgaactccacgcaggacttcgacgagcggcgctcgatggaggcgcag
ttcctcgcgggcgagctggacgtcctctatctggcccccgagcggctgcgcctggactcc
accctctccctcctggcccggggcgagatctccgtgttcgcgatcgacgaggcgcactgc
gtcgcccagtggggccacgacttccgccccgactatctggccctgtcggtgctcggcgag
cggtggccggacgtgccgcgcatcgccctgacggcgaccgcgacgaacgccacgcacgag
gagatcacccgccgcctcggcatgccggacgcgaagcacttcgtggcgagcttcgaccgg
ccgaacatccagtaccggatcgtgccgaagtccgactccaagaagcagctgctgaccttc
ctcaaggaggagcacgccggggacgcgggcatcgtctactgcctctcgcggaactccacc
gagaagatcgcggagtatctgagccgcaacggcgtgcgggccgttccgtaccacgcgggc
ctggacgccgccacgcgcgccgaccaccaggcgcggttcctccgcgaggaggggctcgtc
gtcgtcgcgacgatcgcgttcggcatgggcatcgacaagccggacgtgcgcttcgtcgcc
catgtcgacctccccaagtccgtcgagggctactaccaggagaccggccgcgcgggccgt
gacggggagccgtcgacggcctggatggcgtacggactccaggacgtcgtccagcagcgc
aagctcatccagggcggcgagggcgacgaggcccaccgccgccgggccgccgcccacctg
gactcgatgctggcgctctgcgagacggtccagtgccgccggtcccagctgttgacctac
ttcggccaggagcccacggccgccgcgtgcggcaactgcgacacctgcctgaccccgccg
gagacctgggacggcacggtcgtctcgcagaagctgctctccacggtggtgcggctgaag
cgcgagcggaatcagaagttcggcgcgggccagatcatcgacatcctgctgggccgcaag
accgccaaggtcatccagttcgaccacgaccagctctccgtcttcggcatcggcgaggag
ctggccgaggcggagtggcgcggcgtggtgcgccagctgctggcccagggactgctcgcg
gtcgagggcgagtacggcacgctggtcctcaccgacgagagcgcgacggtgctcggccgc
gagcgggacgtgctgctgcgcaaggagcccaagaagcccacgtcccgttcctcgtcctcc
gcgggcggagcgaagggccggggcaaggcggccgccgccgacctccccgagtccgccgtc
ccggtcttcgaggcgctgcgcgcctggcgcggggcgacggcgaaggagcagggcgtcccg
gcgtacgtcatcttccacgacgcgacgctgcgggagatcgcgacgctgcacccggcctcg
ctcgcggagctgggcggcgtcagcggcctgggcgagaagaagctcgcgacgtacggggaa
ggtgtgctggaggtcctggcccagacgtccccgggggcggccccggaggcacccgcgtcc
caggctcccgcccctgcacccgtggcccccgcaccacatacgccgcccccggcccgcacc
aaggccccggccccgcagcacagcgaccccgagttcggctgggacgaggaaccgcccgag
tacgagtga
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