Streptomyces sp. CMC78: SCMC78_48930
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Entry
SCMC78_48930 CDS
T11197
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
stcm Streptomyces sp. CMC78
Pathway
stcm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
stcm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SCMC78_48930 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stcm03019
]
SCMC78_48930 (orn)
03009 Ribosome biogenesis [BR:
stcm03009
]
SCMC78_48930 (orn)
Messenger RNA biogenesis [BR:
stcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCMC78_48930 (orn)
Ribosome biogenesis [BR:
stcm03009
]
Eukaryotic type
Pre-60S particles
RNases
SCMC78_48930 (orn)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BFP55086
UniProt:
A0AB33KIP7
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All DBs
Position
complement(5425752..5426357)
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AA seq
201 aa
AA seq
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MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR
QMHTASGLLDELAGGTTLADAEERVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMRDL
ESYLHYRIVDVSSVKELARRWYPRAYFNSPDKNGNHRALADIRDSITELRYYREAVFVPQ
PGPDSERAKEIAARLAAPAAP
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgcatggtgtggatcgactgcgagatgaccgggctctcgttggcggacgac
gcactcatcgaggtggccgccctggtcaccgactcggagctgaacgtgctcggcgaaggg
gtggacatcgtgatccgcccgccggacgcggccctggagaccatgcccgaggtggtgcgg
cagatgcacaccgcctcgggcctgctcgacgagctggccgggggcaccaccctggcggac
gccgaggagcgggtcctggcctacgtccgtgagcatgtgaaggagcccggcaaggccccg
ctctgcggaaactcggtcggtaccgaccgcgggttcctggcgcgggacatgcgggatctg
gagagctatctgcactaccggatcgtggacgtgtcctcggtcaaggagctggcccggcgc
tggtatccccgggcgtatttcaacagcccggacaagaacggcaaccaccgggcgctggcg
gacatccgtgactccatcacggagctccgctactaccgggaggcggtcttcgtgccgcag
cccggcccggactccgagcgcgccaaggagatcgcggcgcgtctggcggctccggccgca
ccgtag
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