Streptomyces sp. CA-256286: JHY03_21290
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Entry
JHY03_21290 CDS
T11337
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stcz Streptomyces sp. CA-256286
Pathway
stcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHY03_21290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stcz03019
]
JHY03_21290
03009 Ribosome biogenesis [BR:
stcz03009
]
JHY03_21290
Enzymes [BR:
stcz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JHY03_21290
Messenger RNA biogenesis [BR:
stcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JHY03_21290
Ribosome biogenesis [BR:
stcz03009
]
Prokaryotic type
rRNA processing factors
JHY03_21290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QTA31988
LinkDB
All DBs
Position
complement(2398630..2402859)
Genome browser
AA seq
1409 aa
AA seq
DB search
MPQPNEPAANGNNEENTPGDKLPPRRRRRAASRPAGPPGAPLTPGATEETAPAAEAAAVE
TPAAAPEETAPPARTRRRAVRKATAPVGAPETAEVVAETVEAAAPAAEAPAAEPADSDAP
APRARRRAVRKATAPAGAPQAAEVVEAVEVVETPAEPLVEEEPEAEPEAAPEPPAPRRRR
ASRKATAPAGAPQAAEAAVVVEPVAPAQPVVESAAEAAEPVAPAAEAPRGRTRRRASAPA
GTPQAAVTAAPEAVDEPAPAVEPSSEPAAPVEEPPAPRSRRRASRKATSPAGTPQVSEAA
EPVAAAPAAEEPVEGVEAGESLPAAVAEELAAEVEEVEEAAPRGRQRRRATAAAGRPEFT
AKTEEPTRKGRRATRPAVAVFQAPVFAEPMFQTPETAAAAAAAAGSSSPYDEVDEVDEAE
EQQTAEVQQAPAPAETAPQGGSRRRRRRRGEAAEAEQAAPVEAPAEQPAEEAPEAEADEH
DGEDTDEYGDRPSRRRRRGGRRRRRGEANDTDDAEQHADEAPAHSRSEDTRAEAEQAQVQ
DTDEEEDDDNDSSASGSSSSRRRRRRRRRSGEGAAEADNGTDDPERTVVKVREPRKKEER
EPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQS
GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA
GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG
SMTGISRKLPDTERSRLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEEIQ
KKAKGTSGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLT
ERLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQG
GNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRT
KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGSKKSKK
RGRGGAGQDHEQDHGHEHGHDDHAAEPVETESEAELAAEVAAPVSLADLEPAADEEFYSS
PAEAEAAAGRGRGRRRASRKASAPAGAPRTGAPAPVAEAPAPVTEAEPVAPVVDTPEPKA
PEAPVAQEAAEPAEAAPQGRTRRRATRKASAPAGSPKQAEAAEPVQPAEPTADPAAAEDP
VVEAPAEAAPVPETPVAEAAVSEAPQDAAPPRARRRVTRKVTAPAGSPTGAEEAGIVVVE
SAPEAKAPEAGADASDEAAPVKKTARKTAAKKAPAKKAVAKKTVAKKTAAKKTTAKTTAK
KATKKTVAAEQSSPSVTASAPSTDGEASA
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagccgaacgaacccgctgccaacgggaacaacgaagagaacacccccggggac
aagctgccgccgcgccgcaggcgccgcgccgcttcccgcccggcgggcccgccgggcgcg
cccctgacgccgggcgccaccgaggagaccgcaccggctgccgaggccgccgctgtggag
accccggccgccgcgcccgaggagaccgcaccccccgcccgtacgcgccgccgtgccgtg
cgcaaggcgaccgcgcccgtcggcgctccggagaccgccgaggtggtcgccgagaccgtg
gaggcagccgccccggccgccgaggccccggccgccgagcccgccgacagcgacgccccg
gcgccccgcgcccgccgccgcgcggtccgcaaggcgacggctccggccggcgccccgcag
gccgccgaggtcgtggaggccgttgaggtcgtcgagaccccggccgagccgctcgtggag
gaggagccggaggccgagcccgaggccgccccggagcccccggccccgcgccgccgccgt
gcctcccgcaaggcgaccgcgcccgccggtgccccgcaggccgccgaggccgctgtggtc
gtcgagccggtcgcgcccgcccagcccgtggtcgagtcggccgccgaggccgccgagccg
gtcgcacccgccgccgaggccccgcgcggccgtacccgccgccgtgcctccgccccggcc
ggtactccgcaggccgccgtgaccgccgccccggaagccgtggacgagcccgcgcccgcc
gtggagccttcctccgagcccgccgcgcccgtcgaggagcccccggcgccgcgcagccgc
cgccgtgcctcccgtaaggccacaagccccgccggaaccccgcaggtcagcgaggcggcc
gagccggtcgccgccgctcccgccgccgaggagcccgtggagggcgtcgaggccggcgag
agcctgcccgccgccgtcgccgaggagctcgccgccgaggtggaggaggtcgaggaggcc
gccccgcgcggacgtcagcgccgccgggccaccgccgccgcgggacgccccgagttcacc
gccaagaccgaggagccgacccgcaagggccgtcgcgcgacgcgccccgccgtcgccgtg
ttccaggccccggtcttcgccgagccgatgttccagacccccgagacggcggccgccgcc
gctgccgcggccggttcctcctccccgtacgacgaggtggacgaggtcgacgaggccgag
gagcagcagaccgccgaggtccagcaggctcccgcgcccgcagaaaccgcgccgcagggc
ggttcgcgccgccgtcgccgccgccgtggtgaggccgccgaggccgagcaggccgccccg
gtggaggcgcccgccgagcagcccgccgaggaggcccccgaggccgaggccgacgagcac
gacggcgaggacaccgacgagtacggtgaccgcccctcgcgccgccgccgtcgcggtggc
cgccgtcgccgtcgtggtgaggccaacgacacggacgacgccgagcagcacgccgacgag
gcgcccgcgcactcccgttccgaggacacccgcgccgaggccgagcaggcgcaggtacag
gacaccgacgaggaggaggacgacgacaacgactcctccgcgtccggttcgagcagcagc
cggcgtcgtcgccggcgccgtcgccgcagcggtgagggcgctgccgaggccgacaacggc
acggacgacccggagcgtacggtcgtcaaggtccgcgagccccgcaagaaggaggagcgc
gagccgggcaccggcttcgacgaggtccagtccatcaagggctcgacccgtatggaggcg
aagaagcagcgccgccgcgagggccgcgagcagggccgtcgccgcgtcccgatcatcacc
gaggcggagttcctcgcccgccgcgaggccgtcgagcgggtgatggtcgtccgccagagc
ggcgagcgcacccagatcggcgtactcgaggacaacgtgctcgtcgagcactacgtcaac
aaggagcaggccaccagctacgtcggcaacgtctacctgggcaaggtgcagaacgtcctg
ccctccatggaggccgccttcgtcgacatcggcaagggccgcaacgccgtcctgtacgcc
ggtgaggtcaacttcgaggcgctcggcatggcccacgggccgcgccgcatcgagaccgcg
ctcaagtccggccagtcggtcctggtccaggtgaccaaggacccgatcggccacaagggc
gcccggctgaccagccaggtctcgctgcccggccgctacctcgtctacgtgcccgagggc
tcgatgaccgggatcagccgcaagctgcccgacaccgagcgctcccgcctcaagacgatc
ctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcc
agcgaggacgagctgcgccgtgacgtcgagcggctccagggtcagtgggaggagatccag
aagaaggcgaagggcaccagcggctccaacgcgccgacgctgctctacggcgagccggac
atgaccgtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtcatcgtcagc
ggtgacgacgcgtgggagaccatccacggttacgtctcgcacgtggcgcccgacctcacc
gagcggctctcgcgctggacgtccgaggtcgacgtcttcgcgacgtaccgcatcgacgag
cagctgatgaaggcgctggaccgcaaggtctacctgcccagcggcggttcgctggtgatc
gacaagaccgaggcgatggtcgtcgtcgacgtcaacaccggcaagttcaccggccagggc
ggcaacctggaggagaccgtcaccaggaacaacctggaggcggccgaggagatcgtgcgc
cagctgcggctgcgcgacctcggcggcatcgtcgtcgtcgacttcatcgacatggtgctg
gagtccaaccgggacctcgtcctgcggcgcctcctggagtgcctgggccgcgaccgcacc
aagcaccaggtcgccgaggtcacctcgctcggcctggtccagatgacccgcaagcgggtg
ggccagggcctgctggagtccttctccgagacctgcgtccactgcaacgggcgcggtgtc
atcgtccacatggagcagccgacgtccgtcggtggcggcggttccaagaagtccaagaag
cgcggccgcggtggcgcgggccaggaccacgagcaggaccacggccacgagcacggtcac
gacgaccacgcggccgagcccgtcgagaccgagtccgaggccgagctggccgccgaggtc
gccgccccggtgtccctggcggacctggagccggccgccgacgaggagttctacagcagc
ccggccgaggccgaggcggcagccgggcgtggccgtggccgccgccgggcctcccgcaag
gcgtcggccccggccggtgccccgaggaccggggctcccgccccggtggccgaggcaccc
gctcccgtcaccgaggcggagccggtcgcgccggtcgtcgacacgcccgagcccaaggct
ccggaggccccggtcgcccaggaagccgccgagccggccgaggccgcgccccagggccgt
acgcgccgtcgggccacccgcaaggcgtccgccccggcgggttcgccgaagcaggccgag
gcggcggagccggtgcagccggccgagcccaccgcggacccggcggccgccgaggacccg
gtcgtcgaggcgcccgccgaggccgctcccgtaccggagaccccggtcgcggaggccgct
gtgtcggaggccccccaggatgccgctccgccgcgggcccggcgccgggtgacccgtaag
gtcaccgccccggcgggttcgcccacgggtgcggaggaggcagggatcgtcgtcgtggag
tcggcgcccgaggcgaaggcccctgaggccggggccgacgcgtccgacgaagctgccccg
gtgaagaagacggcccgcaagaccgccgccaagaaggctccggcgaagaaggcggtggcc
aagaagacggtcgccaagaagaccgccgcgaagaagaccacggcgaagacgaccgcgaag
aaggcgacgaagaagaccgtcgccgccgagcagtcgtcgccttccgtgaccgcttcggcg
ccgtccaccgacggcgaagcgtcggcctga
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