Streptomyces sp. CA-256286: JHY03_36560
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Entry
JHY03_36560 CDS
T11337
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
stcz Streptomyces sp. CA-256286
Brite
KEGG Orthology (KO) [BR:
stcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stcz03019
]
JHY03_36560
Enzymes [BR:
stcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JHY03_36560
Messenger RNA biogenesis [BR:
stcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JHY03_36560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_19
WHD_HA2
DEAD
AAA_22
nSTAND3
T2SSE
AAA_16
NACHT
nSTAND_NTPase5
PhoH
NTPase_1
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
QTA33476
LinkDB
All DBs
Position
complement(4114343..4118290)
Genome browser
AA seq
1315 aa
AA seq
DB search
MSTSFADLQSQLGQLSLRDANRLGRRLEGARRIRKPEARQSVLDEIAAEAGKAAERLAVR
AARLPALSYPEELPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERVADELKTPLGETVGWKVRFTDQVNPESTYLKLMTDGILLAEIQ
TDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPKRPDLKVVITSATIDPERFARHFGE
APIVEVSGRTYPVEVRYRPLLEDDSEDSDRDQITAICDAVDELSHEAPGDVLVFLSGERE
IRDTADALNKRNLRHTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLFSEDDFLTRPE
FTDPEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALEQGERSA
GEGKKGQRLTPLGRKLSQLPVDPRLARMVIEADRNGCAREVMVIAAALSIQDPRERPAEK
QTQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDI
YAQLRTVAKQMGIAVEEPKGEESVPEQAVHTSLLSGLLSHIGLKDTEKNEYVGARNAKFA
IFPGSALFKKQPRFVMSAELVETSRLWARVNARVEPEWIEPLAQHLLKHTYSEPHWEKDQ
AAVMAYERVTLYGVPIIAQRKVNFGRIDQEASRDLFIRNALVEGDWRTHHQFFHDNRKLL
GEVEELEHRARRRDILVDDETLFDFYDQRIPEHIVSGAHFDSWWKNKKREEPDALDFERS
MLINEKAGAVTKDDYPDSWRQGKLKFKVTYQFEPGADADGVTVHVPLQVLNQVTSEGFDW
QIPGLREEVVTELIRSLPKPIRRHYVPAPDYADKFLDRAVPLQEPLPFTLARELQRMVGV
PVTADDFDLSRVPDHLKITFRIVDERRRKVAEDKDLEALKLQLRPKARQALSKAAAATAG
PSGESIERSGLTDWTIGTLNKVFETRRAGQPVKAYPALVDQGETVAVRLFDTEAEQQQAM
WRGTRRLIMLNIPVNPAKFASDRLSNQQKLALSRNPHGSVQALFEDCATAAADRLIAAHG
GPAWDEKAFRTLYDKVRADLVDLTVRTIDQVQQILAAWQACERRLKSTNSLTLVANVTDV
REQLARLVPSGFVTATGLRRLPDLMRYLVAADRRLQQMPTAVQRDTTRMAKVHEMQDEYA
WLLEQLPQGRPVGQEVLDVRWMIEELRVSYFAHALGTAVPVSDKRIVKAIDALAP
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttcctttgccgatctccagtcccagctcggacagctctcgctccgtgacgcg
aaccggctcggccggcgcctcgaaggagcgcgccgcatccgcaagcccgaggcccgccag
tccgtgctggacgagatcgcggccgaggcgggcaaggcggccgaacggctcgcggtgcgc
gcggcccggctgccggccctgtcgtacccggaagagctgccggtcagccagaagaaggac
gagatcctggaggcgatacgtgaccaccaggtcgtgatcgtcgccggtgagaccgggtcc
gggaagaccacgcagatccccaagatctgtatggagctggggcgcggcgtccggggcatg
atcgggcacacccagccccgccggatcgccgcgcgcacggtcgcggagcgcgtcgcggac
gagctgaagacgccgctgggcgagaccgtcggctggaaggtccgcttcaccgaccaggtg
aacccggagtcgacgtatctgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgctggcgtacgacacgatcatcatcgacgaggcccacgagcggtcc
ctcaacatcgacttcctgctcggctatctggcccggctgctgcccaagcgcccggacctg
aaggtcgtcatcacctcggcgaccatcgacccggagcggttcgcgcgccacttcggcgag
gcgccgatcgtggaggtcagcgggcgtacgtatccggtcgaggtgcggtaccggcccctg
ctggaagatgacagcgaggactccgaccgggaccagatcaccgcgatctgcgacgccgtc
gacgagctgagccacgaggcccccggtgacgtcctggtcttcctctccggcgagcgcgag
atccgggacacggcggacgcgctgaacaagcggaacctcagacataccgaggtgctcccc
ctctacgcgcgcctctcgcacgccgagcagcaccgcgtcttccagcgccacacgggacgc
cgcatcgtgctggcgaccaacgtcgccgagacctcgctgacggttcccggcatcaagtac
gtgatcgacccgggcaacgcccgtatctcccgctacagccaccgcaccaaggtccagcgg
ctgcccatcgagcggatctcccaggccagcgccaaccagcgcaagggccgctgcggccgt
acgtcggacggcatctgcatccggctgttctcggaggacgacttcctcacccggccggag
ttcaccgatccggagatcctgcggaccaacctggcctccgtcatcctccagatgaccgcg
gccggtctcggcgagatcgagaagttcccgttcatcgacccgccggaccaccgcaacatc
cgtgacggcgtacagctcctccaggagctgggggcgctggagcagggcgagaggtccgcc
ggggaggggaagaaggggcagcggctcaccccgctcggccgcaagctctcccagctgccc
gtcgacccacgcctggcccggatggtcatcgaggccgacaggaacggctgcgcccgcgag
gtcatggtcatcgccgccgcgctctccatccaggacccgcgcgagcggcccgcggagaag
cagacgcaggccgaccagcagcacgcccggttcaaggacgagacgtccgacttcctggcg
tacctgaacctctggcgctatgtccgcgagcagcagaaggagcgtggctcgtcctcgttc
cgccggatgtgcaagcaggagtatctgaacttcctgcgcatccgcgaatggcaggacatc
tacgcgcagctgcgcacggtcgcgaagcagatgggcatcgccgtcgaggagcccaagggc
gaggagtccgtcccggagcaggcggtgcacacctcgctgctgtccgggctgctgtcgcac
atcgggctgaaggacaccgagaagaacgagtacgtgggcgcgcgcaacgccaagttcgcg
atcttccccgggtcggcgctcttcaagaagcagccgcggttcgtgatgtcggcggagctg
gtggagacctcccggctctgggcgcgggtcaacgccagggtcgagccggagtggatcgag
ccgctggcccagcacctgctgaagcacacctacagcgagccgcactgggagaaggaccag
gccgcggtgatggcgtacgagcgggtcacgctctatggcgtgccgatcatcgcccagcgc
aaggtcaatttcggccgtatcgaccaggaggcctcgcgggacctgttcatccgcaacgcc
ctggtcgagggcgactggcgcacccaccaccagttcttccacgacaaccgcaaactcctc
ggcgaggtcgaggagttggagcaccgcgcccggcgccgcgacatcctcgtggacgacgag
acgctcttcgacttctacgaccagcggattccggagcacatcgtctccggggcgcacttc
gactcgtggtggaagaacaagaagcgcgaggagccggacgcgctcgacttcgagcgctcc
atgctgatcaacgagaaggccggggccgtcaccaaggacgactacccggactcctggcgg
caggggaagctcaagttcaaggtgacgtaccagttcgagcccggtgcggacgcggacggt
gtgaccgtccacgtcccgctccaggtgctcaaccaggtcacttcggagggcttcgactgg
cagatcccggggctgcgcgaggaggtcgtcaccgagctgatccgctcgctgccgaagccg
atccgccggcactacgtccccgcgccggactacgcggacaagttcctcgaccgggcggtc
ccgttgcaggaaccgctgcctttcaccctggcgcgggagctccagcggatggttggggtg
ccggtgacggcggacgacttcgatctctcccgggtcccggaccacctgaagatcacgttc
cggatcgtcgacgagcgacggcgcaaggtcgccgaggacaaggacctggaggcgctgaag
ctccagctgcgcccgaaggcccgccaggcgctctccaaggccgccgcggcgaccgcgggg
ccctccggcgagtccatcgagcgctcgggcctcacggactggacgatcggcacgctgaac
aaggtcttcgagacccggcgggccgggcagccggtgaaggcgtacccggcgctggtggac
cagggcgagaccgtcgccgtacggctcttcgacaccgaggccgagcagcagcaggccatg
tggcgcgggacccggcggctgatcatgctgaacatcccggtcaacccggcgaagttcgcc
tccgaccggctctccaaccagcagaagctggccctgtcccgcaatccgcacggctcggtc
caggccctcttcgaggactgcgccaccgccgccgccgaccggctgatcgccgcgcacggc
ggcccggcgtgggacgagaaggcgttccggacgctgtacgacaaggtgcgcgccgatctg
gtggacctgaccgtccgcacgatcgaccaggtgcagcagatcctggccgcctggcaggcc
tgcgagcgccggttgaagtcgaccaacagcctgacgctggtcgccaacgtcaccgacgta
cgggagcaactggccagactcgtaccgtccggtttcgttacggcgaccggactgcgccgg
ctgccggacctgatgcggtacctcgtggcggccgaccggcggctccagcagatgccgacg
gccgtccagcgggacaccacgcggatggcgaaggtccacgagatgcaggacgagtacgcg
tggctgctcgaacagctcccgcaggggcggccggtggggcaggaggtgctcgacgtgcgc
tggatgatcgaggagctgcgggtcagctacttcgcgcacgcgctgggcaccgcggtcccc
gtctccgacaagcggatcgtgaaggccatcgacgccctcgcgccctga
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