Streptococcus pseudopneumoniae: SPPN_07175
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Entry
SPPN_07175 CDS
T01590
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
std
Streptococcus pseudopneumoniae
Pathway
std03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
std00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPPN_07175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
std03400
]
SPPN_07175
Enzymes [BR:
std01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SPPN_07175
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SPPN_07175
DNA repair and recombination proteins [BR:
std03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SPPN_07175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_8
Zn_ribbon_6
RNHCP
DUF7573
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AEL10861
LinkDB
All DBs
Position
complement(1369712..1370536)
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVETVRRGLEKLILGKKISSIEIRYPKMIKTDLDEFQREVPGQIVESMGRRGKYL
LFCLTEKVLISHLRMEGKYFYYPDQGPERKHAHVFFQFEDGGTLVYEDVRKFGTMELLVP
DLLDAYFISKKLGPEPSEQDFDLQVFQSALAKSKKPIKSHLLDQTLVAGLGNIYVDEVLW
RAQVHPARPSQTLTAEEATAIHDQTIAVLGQAVEKGGSTIRTYTNAFGEDGSMQDFHQVY
DKTGQECVRCGTIIEKIQLGGRGTHFCPNCQRRD
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccgttcgtcgtggcttggaaaaattgattttgggt
aagaagatttcgagtatagaaattcgttatcccaagatgattaagacggatttggacgag
tttcaaagggaagtgcctggtcagattgttgagtcaatgggacgtcgtggtaaatattta
cttttctgcctgacagaaaaggttttgatttcccatctgcggatggagggcaagtatttt
tactatccagaccaaggacctgaacgcaagcatgcccatgttttctttcagtttgaagat
ggtggcacgcttgtttatgaggatgttcgcaagtttggaaccatggaactcttggtgcct
gaccttttagacgcctactttatttctaaaaaattaggtcctgaaccaagcgaacaagac
tttgatttacaggtctttcaatctgcccttgccaagtccaaaaagcctatcaaatcccat
ctcctagaccagaccttggtagctggacttggcaatatctatgtggatgaggttctctgg
cgagctcaggttcatccagctagaccttcccagactttgacagcagaagaagcgactgcc
attcatgaccagaccattgctgttttgggccaggctgttgaaaaaggtggctccaccatt
cggacttataccaatgcctttggggaagatggaagcatgcaggactttcatcaggtctat
gataagactggtcaagaatgtgtacgctgtggtaccatcattgagaaaattcaactaggc
ggacgtggaacccacttttgtccaaactgtcaaaggagggactga
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