Streptococcus thermophilus LMD-9: STER_1749
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Entry
STER_1749 CDS
T00414
Name
(GenBank) mRNA degradation ribonuclease J1/J2, metallo-beta-lactamase superfamily enzyme
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ste
Streptococcus thermophilus LMD-9
Pathway
ste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STER_1749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ste03019
]
STER_1749
Messenger RNA biogenesis [BR:
ste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STER_1749
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
SIS_2
Motif
Other DBs
NCBI-ProteinID:
ABJ66890
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Position
1636421..1638103
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AA seq
560 aa
AA seq
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MASKINLKPEEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDY
SYIVENVDRVKALVVTHGHEDHIGGIPFLLKQANIPIYAGPLALALIKGKLEEHGLLRDA
QLYEINADTELTFKNMSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDLTPVGEPAD
LHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFR
LQQAAEAAVKTGRKIVVFGRSMEKAIVNGVELGYIKVPKGTIIDPSEMKNYHASEILILC
TGSQGEPMAALARIANGMHRQVTLQPGDTVIFSSSPIPGNTTSVNRLINTIQEAGVDVIH
GKINNIHTSGHGGQQEQKLMLRLIKPKFFMPVHGEYRMQKVHADLAVDCGVPKENIFIME
NGDVLALTKDSARRAGHFNAQDIYVDGNGIGDIGAAVLRDRRDLSGDGVVLAVATVDFNS
KMILAGPDILSRGFIYMRESGDLIRDSQRILFNAIRIALKNKDASIQSVNGAIVNALRPF
LYEKTEREPIIIPMILTPDN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaatcaatctaaaacctgaagaagttggggtttatgcgattggtggtttg
ggagaaatcggtaaaaatacctatggtattgaataccaggatgaaatcatcatcgtcgat
gcgggtattaaattccctgaagatgatcttctcggtatcgattatgtcatcccggactat
tcttacatcgttgaaaacgttgaccgtgttaaggctcttgtcgttactcacggtcacgaa
gaccatattggtggtatccccttccttcttaaacaggcaaatatcccaatctatgcagga
ccacttgctcttgctcttatcaaaggaaaattggaagaacacggactactacgtgatgca
caactctatgaaattaacgctgatacagagcttactttcaaaaatatgagcgtaaccttc
ttccgcacaactcactcaattccagaacctctcggaattgtcatccatacaccacaaggt
aaaattgtttgtaccggtgactttaagttcgacctcactccagtaggtgagccagcagac
cttcatcgtatggctgcactcggtgaagaaggcgttctttgcctcctctcagactcaacc
aatgctgaagtcccaactttcactaattccgagaaggtcgttggacaatccatcatgaaa
ataattgaaggcattcacggacgtattatcttcgcctcatttgcctctaatattttccgt
cttcaacaagctgctgaggctgctgtaaaaaccggtcgtaagattgttgtctttggacgt
tctatggagaaagccattgttaatggtgttgaactaggctatatcaaagttccaaaagga
actattattgatcctagtgaaatgaaaaactatcatgccagtgagattcttatcttgtgt
accggttctcaaggggagcctatggcggcccttgcacgtattgccaatggtatgcaccga
caagtaacactacaacctggtgacaccgttatcttctcatctagccctatcccaggaaat
acaaccagcgttaaccgtttgattaataccattcaagaagcgggtgtagatgttattcac
ggtaaaatcaacaatatccatacctctggtcacggtggtcaacaagagcaaaaactaatg
cttcgcttgataaaaccaaaattcttcatgcctgttcatggtgaataccgcatgcaaaag
gtccacgcagatctcgctgttgattgtggtgttccgaaagagaatatctttatcatggaa
aatggtgatgtcttagccctaacaaaagattctgctcgtcgtgcaggtcatttcaatgct
caagacatctatgtcgatggtaatggtatcggtgatattggggcggccgttcttcgtgac
cgtcgtgatctctctggagatggtgtcgtccttgctgtcgcaactgttgacttcaattct
aagatgattctagctggtccagatattctcagtcgtggatttatctatatgcgtgaatct
ggtgatcttattcgtgatagccaacgcattctattcaacgctattcgtattgctcttaaa
aataaagacgccagcattcaatccgttaacggagctatcgtcaatgcattacgaccattc
ctatacgaaaaaacagaacgtgagccaattatcattcccatgattctcacacctgataac
taa
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