Sporolactobacillus terrae: C0679_08335
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Entry
C0679_08335 CDS
T05792
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
stea
Sporolactobacillus terrae
Pathway
stea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0679_08335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stea03019
]
C0679_08335
03400 DNA repair and recombination proteins [BR:
stea03400
]
C0679_08335
Enzymes [BR:
stea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0679_08335
Messenger RNA biogenesis [BR:
stea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0679_08335
DNA repair and recombination proteins [BR:
stea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C0679_08335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
DUF5881
Motif
Other DBs
NCBI-ProteinID:
QAA25612
LinkDB
All DBs
Position
complement(1747927..1749462)
Genome browser
AA seq
511 aa
AA seq
DB search
MNSNQRFLKQAQTILKKQFGHEQFRPGQEEIILNVLNGKDVFAMMPTGSGKSLCYQIPGY
LLQGTVLIISPLLSLMEDQVHALRLTGEKNVRTLNGLMHPLERSRVLRNLRSLRFLYLSP
EMLRAPAVMKALSKITIALFVVDEAHCVSQWGHDFRPDYMHLADIRAQLGQPPCLAVTAT
ADEHVRHDVVRSLNLTHPAQIIMSVDRKNIAIIVQKTANQEEKTERLFHLLEKAPYPGII
YCASRDWTERLAEQAKQKLGLRTAFYHGGMASIDRRKIQNQFLDNQIDLLCCTNAFGMGI
NKPDIRLIVHFHFPSSMNAYLQEIGRASRDGKQGLAVLFYTKSDEQLPEGFIDGNFPSDE
TLRRVLLQLDQGTRSLADKNEFMNVLMEEGVSETAARFLFEHASEKPMQQTYSSLLDPCR
MRIKERVAVQVNDLSIMKNYLETSSCRRRFYLQVYHEKLQEKPAYCCDRCRIPLSELMQK
IPKKKRTEPLRLMDWKQKLAALFQESERSPL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtaaccaacggtttttaaagcaagcgcaaacaatcctgaagaagcaattcggt
catgaacagtttcgtcccggccaggaggaaattattctcaatgtactgaatggaaaagat
gtttttgcaatgatgccgaccggaagcggaaaatcgctttgctatcagattcccggttat
cttttacagggaaccgtgctgatcatctcgccacttttgtcgctaatggaagatcaagtg
catgcgttacgattaacgggggaaaaaaatgtccgcactttgaatggattgatgcatccg
cttgaacggtcacgcgtgcttcggaatctgcgttcgctgcgattcttgtatctttcgcca
gagatgctgcgcgctccagcggtaatgaaagcactgtcaaaaataacaattgctttgttt
gttgtcgatgaggcgcactgcgtctctcagtgggggcatgactttcgtccggattatatg
catttggccgacattagagcacaactcggtcagcccccttgtctcgcagttaccgcaaca
gcagatgaacacgtcagacatgatgtggttcgctcgctcaatttaactcatcccgctcaa
ataatcatgagtgttgaccgaaagaatattgcaataatcgtccagaagactgcaaatcag
gaggaaaaaacagaacggctctttcatttgctggaaaaggcgccctatccgggcattatt
tattgtgccagtcgtgactggacagaacgtctggcagaacaggcgaagcagaaactaggg
cttcgaacagctttctatcacggtggaatggcttccattgaccgacgaaaaatacaaaat
cagtttctcgataatcagattgatctcctgtgctgcacgaatgcatttggaatggggata
aataagccggacattcgcttaatcgttcattttcattttccatcctccatgaatgcctac
ttgcaggaaattggccgtgcatcgcgcgacggcaagcaagggcttgctgttctcttttac
acaaaaagtgatgaacaattgccggaggggtttattgacggaaactttccgagcgatgaa
acgctccgccgcgtactccttcagctggatcaaggcactcgatcccttgcggataaaaat
gaattcatgaatgttctgatggaggagggggtttcagaaacagccgcacgttttctgttt
gaacacgcttccgaaaagccgatgcagcaaacctattcttcgctgcttgacccgtgccgt
atgcggattaaagaacgtgtggccgtacaggtcaatgatctctcgattatgaaaaactat
ttggagacctcttcctgcaggcgaaggttttatttacaggtataccatgaaaagttgcaa
gaaaaaccggcctattgttgtgaccgttgcaggatccctcttagtgagctgatgcaaaag
ataccaaagaagaaacgcacagaaccgttgcggttaatggattggaagcagaaattagcg
gcgctgtttcaagaaagcgagcgatcgccactttga
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