Sporolactobacillus terrae: C0679_10180
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Entry
C0679_10180 CDS
T05792
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stea
Sporolactobacillus terrae
Pathway
stea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C0679_10180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stea03400
]
C0679_10180
Enzymes [BR:
stea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C0679_10180
DNA repair and recombination proteins [BR:
stea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C0679_10180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QAA27029
UniProt:
A0A410DDB0
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All DBs
Position
complement(2109228..2110196)
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AA seq
322 aa
AA seq
DB search
MEFQPIKPFEPIRADVIPNGPDWVHQVKWDGVRLLAYCNGQKVRLFNRRQHERTLHYPEL
VSSIHASPASSLILDGEVIALDPHGRPSFHEIMKRDRTTPTGHAKATDSIRVFYMVFDLL
YVNGDWLNSCPLSDRIERLQQWLPLSDAIHFVPVYDNGDALFAGVKEKHMEGIVSKKRNS
RYGIGGKNGNWRKIKVTEDLIAVVGAVTYRNGRVNALLIGQYDLEHRLIYIGRVGSGTLT
SQDWQAVTRLAELLKSQTNPFERQPENVKKVSWLIPKLTVKVEFQEWTENGSLRQPRILA
FVDENPHRCILEEGSNEGNNFQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggaatttcagcccattaaaccgtttgagccgatcagagcagatgtgattccgaacggt
ccggattgggtacaccaagtgaaatgggatggagtgcgccttttagcctactgcaacggg
cagaaagtgcgtctctttaaccggagacaacatgaacggacgcttcattacccggaactg
gtttcgagtattcacgcgtctccggcgtcctcgctcattcttgacggcgaggtgattgcg
cttgatccccatggacgaccgtcttttcatgaaattatgaaacgcgaccgtaccaccccg
accggacatgcaaaagcaacagacagcatacgcgttttttatatggtttttgatttgctg
tacgttaatggagattggctgaactcctgtccgttaagtgatcgaatcgaacggctgcag
cagtggctgcccttgtcagacgcgatccatttcgtcccagtctatgataacggagatgct
ttatttgccggtgttaaggaaaagcacatggaggggattgtttcaaaaaaaagaaacagc
cgctatggcattggcggaaaaaatggaaattggcgaaagataaaagttactgaagatttg
atcgctgtggtcggcgcggttacctatcgcaacgggagagtaaacgccttacttatcggc
caatacgacttggagcatcgattgatctatattgggcgtgtgggcagcgggacgctgacg
agccaagattggcaagcagtgacacggcttgcggaactgctaaaaagtcagaccaatccc
tttgagcgtcagccagagaacgtaaaaaaagtatcatggctgataccaaaattaaccgtg
aaggttgaatttcaggaatggaccgagaatggatcgcttaggcagccgagaattctggca
tttgttgatgaaaatccgcatcggtgcattctagaggagggtagtaatgaaggcaacaat
ttccaatga
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