Sporolactobacillus terrae: C0679_14305
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Entry
C0679_14305 CDS
T05792
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stea
Sporolactobacillus terrae
Pathway
stea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0679_14305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stea03021
]
C0679_14305
03019 Messenger RNA biogenesis [BR:
stea03019
]
C0679_14305
Transcription machinery [BR:
stea03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C0679_14305
Messenger RNA biogenesis [BR:
stea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C0679_14305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA
AAA_22
ATPase_2
Mor
AAA_24
Spore_III_AA
DUF5601
Motif
Other DBs
NCBI-ProteinID:
QAA26640
LinkDB
All DBs
Position
complement(2943908..2945179)
Genome browser
AA seq
423 aa
AA seq
DB search
MPITLAELENMKLKELYEHAKAFKVSYYSKLNKRELIFSILKKQAEKDGLSLMEGVLEII
PNEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVTGKVRPPKENERYFGLLRVEAV
NGENPDTAKERVHFPALTPLYPNRQMVLETGKENFSTRIIDMVSPVGFGQRGMIVAPPKA
GKTTLLKEIANSITINYPDVELIVLLVDERPEEVTDIERSVKGDVVSSTFDEVPENHVKV
SELVLERAMRLVEHKRDVVILMDSLTRLARAYNLVIPPSGRTLSGGIDPAAFHKPKKFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRRLAERRIFPAIDIRR
SSTRKEELLVNRDHLEKLWAMRKTMDESQEFVEHFYKRIRETTSNQEFFDLFEKEKKGSL
QTR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgccgattacattagcagaattagaaaatatgaaactcaaagaattgtatgagcatgcg
aaggcgtttaaagtctcttattatagtaagctaaataaaagggaacttattttctcaata
ttaaaaaaacaagcggaaaaagacggcttgtcacttatggagggtgttcttgaaatcatt
ccgaacgaaggatttggtttcttgaggccgatcaactactcaccgagttcagaggatatc
tatatttcagcctcacaaattcgccgctttgatttgcgaaatggtgacaaagtgacgggc
aaggtgaggccgccaaaggaaaatgaacgctatttcggactcctcagggttgaagcggtt
aatggcgaaaacccggatacagcaaaggaacgcgtacactttcctgcattgacaccgctt
tatccaaatcgacagatggtgttggaaacaggaaaagaaaacttttcaacgcgaattatc
gatatggtgtcaccagttggcttcggtcaaagagggatgattgttgcgcctccgaaagca
ggaaagacaacacttttaaaagaaatcgccaacagcatcaccatcaactatcccgatgtt
gaactcatcgttttgcttgttgatgaacgtccggaagaagtgacggatattgaacgctcg
gttaaaggcgatgttgtgagttcaacgttcgacgaagtgccggaaaatcatgttaaagtt
tcagaattggtacttgaacgagccatgcgtctggtcgagcacaaacgtgatgttgtcatc
cttatggacagcttaacacgccttgcacgcgcgtataaccttgtgattccgccaagcggc
agaacattgtccggtggtattgatccggcagcattccataaaccgaagaaattcttcggt
gcggcgcgcaatattgaggaaggcggaagcttgaccattcttgcgaccgctttggttgac
accggttcacggatggacgatgtaatctatgaagaattcaaaggaaccggcaatatggaa
ctgcatcttgatcgtcgattggctgaacggagaattttccctgcaatcgatattcgtcgc
tccagcacgcgtaaggaagaattgctcgttaatcgcgaccacttggaaaaattgtgggcg
atgcgtaaaacaatggatgaatcacaagaatttgtggaacatttttacaaacgaattcgc
gaaaccacatccaaccaagaattcttcgacctgtttgagaaagagaagaagggcagttta
caaacaagataa
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