Sporomusa termitida: SPTER_18630
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Entry
SPTER_18630 CDS
T06115
Symbol
polC_1
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
sted
Sporomusa termitida
Pathway
sted03030
DNA replication
sted03430
Mismatch repair
sted03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPTER_18630 (polC_1)
03430 Mismatch repair
SPTER_18630 (polC_1)
03440 Homologous recombination
SPTER_18630 (polC_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sted03032
]
SPTER_18630 (polC_1)
03400 DNA repair and recombination proteins [BR:
sted03400
]
SPTER_18630 (polC_1)
Enzymes [BR:
sted01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPTER_18630 (polC_1)
DNA replication proteins [BR:
sted03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPTER_18630 (polC_1)
DNA repair and recombination proteins [BR:
sted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPTER_18630 (polC_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
HHH_3
DNA_pol3_a_NII
tRNA_anti_2
DUF655
Rubredoxin
DNA_pol3_a_NI
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QDR80535
UniProt:
A0A517DT52
LinkDB
All DBs
Position
2003084..2006767
Genome browser
AA seq
1227 aa
AA seq
DB search
MPSYCIIPENCQSFFLFVDQLPVDPVSRELLKAAQVNKVEINPATGAWTIDITVVTGIST
QILDIAAAHLCQKCGLSKVLFNQQVKDLRQYLTQNWSQFAGQVVQGQQAVKPLLLNASWV
LDEETLTIETAGELATAILTDRGIEQAVKAFIWQEFGRRCEVRFINSVSEEPAAPGDDAF
LTPEYKEALSEAAAPQAKAKANDNPVIFGRNIRGAADSLQPISAIQEEARNVTLTGQVIN
HELKELKSGRFLLTFDLVDQTDGISGKVFFDNQEQYNKTAGVINNGMQVIVKGMVQYDRF
ANELILFADSMCRVEKKAARQDTAPVRRVELHAHTRMSAMDAVVSAKNLIKTAASWGHPA
VAITDHGVVQAFPEAYEEASNAGIKVIYGMEGYLFDEDINQSRHIIILAQNNIGLRNLYR
LVSISHLRYLHRKPRIPRKILDGYRDGLLLGSACEAGELIQAMINGSNEEELISIARYYD
YLEIQPTANNEFLLRKGKVADEQGLRDINIRICGLGQKLGMPVVATCDVHFLNPEDEIYR
RILMAGQGYDDADQQPPLFFRTTEEMLAEFSYLGPDKAYEVVIETPRQINDLIEVIKPIP
EELYSPQIPGAEEEIKDMSYKKAELLYGTPLPELVSDRLKYELNSIINNGFAVLYLIAHK
LVKKSMDDGYLVGSRGSVGSSFVATMTGITEVNPLPPHWRCPACKYSEFITDGSYGGGFD
LPDKDCPHCRLRMEKNGHDIPFAVFMGFHGDKVPDIDLNFSGDYQPVAHKYTEELFGRDN
VFRAGTIATIAEKTAYGFVKNYLSEKGSAARNAHINRLLGGCTGVKRTTGQHPGGIMVIP
RDMDVHHFTPIQYPADDKNSATITTHFDYHSISSRLVKLDILGHDDPTVIKMLEDLTGID
AKTIPFDDAVTMSLFSSTRALKLTPDDLNSTVATFGIPEFGTKFVRQMLEDTKPKTFSEL
VRISGFSHGTDVWLNNAQDLIRNGTAKLSEAISARDDIMVYLIHRGVDPQVAFKVMESVR
KGKGVKSDDVEKLRAKNVPAWYVESCQKIKYMFPKAHAVAYVMMAFRIAYCKVHHPLAFY
AAYFTVRANDFDADLIIRGEKALKAELVILEEKGNTLSVKEKSIQTILEMAHEMYLRGFV
FHRVDLYKSDATKFQIVDNGLLPPLGSLQGLGESAAHNIVAARQNKPFSSIEDIRSRSRV
SKTVIDILKNHGCLAGLDDTDQIMLFA
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgccgagttattgtattataccagaaaattgtcagagctttttcctgtttgtcgaccaa
ttaccggttgatccggtaagccgggaattattaaaagcagcgcaggtaaataaggttgaa
atcaatcctgccaccggggcctggacgatagatataactgttgtcacagggatttcaacg
caaattctggatattgccgcagcacatttatgtcagaaatgcggcttaagcaaagtcctg
tttaatcaacaggttaaagacctaagacagtatttaacgcaaaattggtcccagtttgcc
ggacaggttgtgcagggacagcaggcagtaaaacctttattgttaaacgcttcctgggtc
cttgatgaagaaacactgacaatcgagactgccggtgaactggccaccgccatcttaaca
gaccgcggtattgaacaggctgttaaagcctttatttggcaggagtttggccgccggtgt
gaagtccggttcatcaattcagtttcagaagagccggccgctccgggcgatgatgcattc
ctgacgccggagtataaagaagccctcagtgaagctgctgcaccccaggctaaggctaag
gccaatgataatccggttatatttggccgcaatatcagaggggccgccgattcgctgcag
ccgatcagtgctatccaggaagaagcgcgcaatgttacccttaccggccaggttattaac
cacgagctaaaagaattaaagtcaggccggtttttacttacctttgaccttgttgatcaa
accgacggtatcagtggcaaggtattttttgataaccaggagcagtacaataaaacagcc
ggtgtgattaacaatggcatgcaggtcattgttaaaggcatggttcagtacgatagattt
gccaatgaactgatattatttgccgacagtatgtgcagagtggaaaaaaaggccgcccgc
caggatactgcgcctgtccgccgggttgaattacatgcccatacccgtatgagtgccatg
gatgcagttgtgtcagccaaaaacttaataaagacagctgccagctgggggcatccggca
gttgccattaccgaccacggggtagtacaggcatttcccgaagcctatgaggaagcgagc
aatgccggtattaaagtcatttatgggatggaagggtatttgtttgatgaggatatcaac
caatcccggcatattatcattttagcgcaaaacaacattggtttgcgcaacctttatcgg
ctggtgtcaatttcacatctcagatacctgcaccgtaaaccgcgtataccccgaaaaatc
cttgacggctatcgtgacggcttattactgggctcggcctgcgaagcgggggaactcatt
caggcgatgatcaacgggagtaatgaagaagaattaatcagtattgcccggtactatgac
tatcttgaaattcaaccaaccgccaataatgaattcctgctgcgcaaaggcaaagtggct
gatgaacaggggttacgcgatattaatatacggatttgcggccttgggcaaaaactaggc
atgccggttgttgccacttgtgatgtccattttctaaacccggaagacgagatatatcgt
cgtatccttatggccgggcagggctatgatgatgctgatcagcagccaccgctttttttc
cggacaacggaggagatgctggctgaattcagctatctcgggcctgacaaagcgtatgag
gtggtaatagaaaccccgcggcagattaatgatctgattgaagtgattaaaccgattccg
gaagagctatactcgccgcaaatccccggcgctgaagaagaaataaaagacatgtcctat
aaaaaggccgaattgctgtatggaacaccattgccggaactggtgtccgaccgtctcaaa
tatgaactgaattccattattaacaacgggtttgcagttttatatctaattgcccataaa
cttgttaaaaagtcgatggacgacggttacctggtaggttcaagaggttcggtagggtct
tcttttgtcgccacgatgacagggataacggaggttaatcccctgccgccgcattggcgc
tgcccggcctgtaagtatagtgaatttattactgacggcagttacggcggcggctttgat
ctgcctgacaaggattgcccgcactgccggctgcgaatggagaaaaacgggcatgatata
ccctttgccgtgtttatgggttttcatggcgacaaggtccccgatattgatctcaacttt
tccggcgattatcagcctgtggctcataaatacacagaagagttatttggccgcgacaat
gtattccgggccgggacaattgcgacaattgctgaaaaaacagcgtatggatttgttaag
aattatctaagcgaaaaaggctctgcggcccgcaatgcccacataaacaggctgctgggc
ggctgcaccggtgttaagcggaccaccggacagcatccgggtggtattatggttataccg
cgcgatatggatgtacatcattttacgcccattcaatatcctgcagacgacaaaaattca
gcaacgatcacaactcattttgattatcactccatcagcagccggctggttaagcttgat
attctggggcatgacgacccgactgtaattaaaatgctggaagatttgaccgggattgat
gccaaaacaattccttttgatgacgcggtaacgatgagcctgttttcatcaaccagggcg
ctaaaactaacccctgatgaccttaacagcacggttgccacctttggcatacctgaattt
ggcactaaattcgtccggcaaatgctggaagacaccaagcccaagacctttagtgaacta
gtgcggatcagcggtttttcccatggcaccgacgtatggctgaacaatgcgcaggatctg
attagaaatggtacggccaaactgtcggaagctatttcagcccgggatgatattatggtt
tatcttatccataggggcgtagatcctcaggttgcgttcaaagttatggaaagtgtacgg
aaaggcaagggcgtgaagtctgacgatgtggagaagctgcgggcgaaaaatgtgccggcg
tggtatgttgaatcctgtcaaaagataaaatacatgtttcccaaagcccatgctgtcgcc
tatgtcatgatggcctttcgcatcgcgtattgtaaagtgcatcatccgctggccttttat
gccgcttatttcacggtcagggctaacgattttgatgctgatctgattatcaggggggaa
aaggccctgaaagctgagctggtgattctggaggaaaaagggaatacactctccgtgaaa
gagaaaagcatccagacaatactggagatggcccatgaaatgtacttgcgcgggttcgta
ttccaccgtgtggatttatataaatcggatgccacaaaattccagattgttgataacggt
cttttgccgccccttggttcattacagggactcggtgaatcagccgcgcataatattgta
gcagcccgccaaaataaaccgttttcatccattgaagatatccgctcacgcagccgggtt
tcaaaaacggttattgatattctgaaaaaccacggctgcctggccggccttgatgatact
gatcagatcatgctttttgcctga
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integrated database retrieval system
