Sporomusa termitida: SPTER_19120
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Entry
SPTER_19120 CDS
T06115
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sted
Sporomusa termitida
Pathway
sted03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sted00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPTER_19120 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sted03019
]
SPTER_19120 (cshA_1)
03009 Ribosome biogenesis [BR:
sted03009
]
SPTER_19120 (cshA_1)
Enzymes [BR:
sted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPTER_19120 (cshA_1)
Messenger RNA biogenesis [BR:
sted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPTER_19120 (cshA_1)
Ribosome biogenesis [BR:
sted03009
]
Prokaryotic type
rRNA helicases
SPTER_19120 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
Helicase_RecD
AAA_30
CMS1
AAA_22
DUF6324
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QDR80583
UniProt:
A0A517DT95
LinkDB
All DBs
Position
2053591..2055171
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AA seq
526 aa
AA seq
DB search
MKDAVTLFGDIALSKKTAAAITAMGFEEPSPIQSQTIPLVLAGNDVLGQAQTGTGKTAAF
GIPIMERITEAKQIQALVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQAIERQIRSL
KLGVQVIVGTPGRLLDHIRRHTIKLDNVRILVIDEADEMLDMGFIDDIQSILQHVPSERQ
TLLFSATMPSEIMALANKYMKDRVTVTISKEQLTVPLIDQIYYETRDKLDGLCRVLDSET
VGLVIIFCRTKKGVDDLVASLSTRGYISDGLHGDLSQAQRDRVMKKFRDGKLDILIATDV
AARGLDIEHITHVINYDIPQDPESYVHRIGRTGRAGKKGVAMTFIQPREYRQLKLIEKEI
RTRILRRQLPSPADILERQSEIIKNQLTQTITRGGLDAYSSIVADLATDYDPIDLAAAAL
KLFQEGYKEQAVIEKQELQFGNTGAEPGMVRLFINAGRAQRIQPQDIVRTIAEEADIQGS
IIGLINIYEKFTFVEVPEGVAERVLSVMNKNTIKGHRVNIEPAKGR
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgcagtaactttatttggtgatatagctttaagcaagaaaacagcagcggca
atcacggccatgggctttgaagaaccgtcgccaattcagagccagaccattccgctcgta
ttagccgggaatgatgttctcggtcaggcgcagaccggtacgggtaaaacagcagctttc
ggcattcccattatggagcggattacggaagccaagcagattcaggcgctggtgcttact
ccgacccgggaactggcgattcaggtgtcggaagaactggctaaaatagggaaatttaaa
cggataaagactttgcccatctatggggggcaggcaatcgaacgtcaaatcagatccctt
aaattaggtgtgcaggtaatcgtaggcacccccggccgtctgcttgatcatatccgccgg
catacaattaagcttgataatgttagaatcctggtcattgatgaagcggatgaaatgctt
gatatgggttttattgatgatattcaaagcattcttcaacatgttccttcagaacggcaa
accctgctattttccgccacaatgccttcggaaatcatggctttggctaataaatacatg
aaagaccgggtaacggtaacgatcagtaaggaacagttaacagtacccctgattgatcag
atctattatgaaacccgtgataaacttgacggtttatgccgggtacttgactcagagaca
gttggcctggtcattatcttctgtcgtaccaaaaaaggggttgatgatctggttgcgtca
ttatccacgcggggctacatctccgatggcttgcacggggacctaagtcaggcccagcgt
gaccgggttatgaaaaaattccgggatggcaagctggatattctgattgccactgatgtt
gcggcccgtgggctggatattgagcatattacccatgttatcaactatgatatcccccag
gacccggagtcctatgttcatcgcatcggccggacaggccgcgccggtaaaaagggggta
gcgatgacttttatccagccgcgcgaatacaggcagttaaaactgattgaaaaagaaata
cggacccgtatcctgcggcggcaattaccatccccggctgatatcctggaacggcagagt
gagattataaaaaatcagctgacccagacgattacacgcggcggtctggatgcctacagc
agcatcgttgccgatctggccaccgactatgatccgattgacctggcggcagcggcgctg
aaactcttccaggaggggtataaggaacaggccgtgattgagaaacaggagctgcaattt
ggcaataccggcgccgaaccgggcatggtgcggctatttattaatgccggccgggcccag
agaattcagcctcaggatatcgtccgtacaattgctgaagaggctgatattcagggcagt
atcatcgggttgatcaatatttatgaaaagtttacttttgtcgaggtcccggaaggtgtt
gccgaacgggttctgtcagttatgaataagaatacgatcaaaggccatcgggttaatatt
gagccggcgaaagggcgttag
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