Sporomusa termitida: SPTER_33110
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Entry
SPTER_33110 CDS
T06115
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
sted
Sporomusa termitida
Pathway
sted02020
Two-component system
sted02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sted00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SPTER_33110 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SPTER_33110 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sted03021
]
SPTER_33110 (rpoN)
Transcription machinery [BR:
sted03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPTER_33110 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_23
Sigma70_r4
HTH_Tnp_ISL3
HTH_3
LacI
HTH_Crp_2
Phage_CII
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QDR81892
UniProt:
A0A517DX16
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Position
complement(3451670..3453094)
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AA seq
474 aa
AA seq
DB search
MQLDYGLKLETTQKLIMTPQLRQAIAILQLPSMELAALVGKELLENPVLEADANYNENEN
EQENGDELPAVPEPTGAEYDNQPEADGWIEYLLGGTPVAGGSQAGMSEPTQAREVADAQT
VSLQDYLEMQLHFAVFEPIHLTVGRYLIGSIDDNGYLCGTLAEAAARLGVAGECAEDVLA
IIQTFDPLGVGARNLQECLLLQLAQQTPGPEIHLVKAIIAEHLDQVACGRYKQIADKLHC
TPHEVQQAVDIIRTLDPKPGRAFGGGQPGYITPDVSIERLNGEYVILINDNHVPQLSINP
YYRQIVREADTDARKYVEGRIHAAVWLIKSIEQRRRTLYNVTEAIISLQRDFFDHGPKFL
RPLTMKKVAEQIGVHESTVSRATANKYVCTPHGVFGMNTFFTAGLQSTGGEDISASRVKQ
ELKELIVAENPKQPLSDQALSDLLNGKGIMVSRRTVAKYREELTIPASSRRKRH
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
gtgcagttagactatggacttaaattagaaacaacacaaaaactaattatgactcctcaa
ttacgccaggcaattgccattctgcaacttccatccatggaattggcggctttggtgggc
aaagaactgttggaaaacccggtgcttgaggctgatgccaactataatgaaaatgaaaat
gagcaggagaatggcgacgagttaccggcggtgccggagccaaccggtgccgaatatgac
aatcagcctgaggctgatggctggattgaatatctgctgggcggtacaccggtagccggc
ggtagtcaggccgggatgtcggagccgacccaggcccgggaagtggctgatgcccagacg
gtatcattacaggattatctggaaatgcagctgcattttgctgtgtttgaaccaattcat
cttacagtcggcagatacctgatcggcagtattgatgataatggctatttatgcggtaca
ctggcggaagcagcagcccggctaggggttgccggggagtgtgcggaggatgttcttgca
attattcaaacctttgacccgctgggggtaggggcgcgcaacctgcaggaatgcctattg
ctccagctggcgcagcagacgccgggtccggagatccacctggttaaggcaattatcgcc
gaacatcttgatcaggtggcatgcggccgctataaacaaattgcagacaagctgcattgt
actcctcacgaagtacagcaggccgttgatattatccggacgcttgatccgaaaccaggc
cgggctttcgggggcggtcagcctggctatattacccccgatgtttcgattgagcgcctt
aatggcgagtatgtcattcttattaacgacaatcatgtgccgcagttgtcaatcaatcct
tattatcggcaaattgtccgcgaagccgacactgatgcccgcaaatatgtcgaaggccgg
atccatgcggctgtctggctgataaaaagtattgaacagcgtcgccgtaccttatataac
gtgactgaagctattattagcctccagcgcgatttttttgaccacggccccaagtttttg
cggccattgacgatgaaaaaagtggccgaacagattggcgttcacgaatcaacagtgagc
agggccactgccaacaagtatgtctgtactccccatggggtatttggcatgaatactttt
tttactgccggtctgcaaagtaccgggggcgaggatatttccgccagccgggtcaagcag
gaactcaaagagcttattgttgccgaaaatccgaaacagcccttaagtgatcaggcgtta
agcgatctcttaaacggcaaggggattatggtttcgcgccggacagtcgctaaataccgg
gaggagctgacgattccggcctcaagcaggcgcaaaagacattaa
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