Sporomusa termitida: SPTER_36490
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Entry
SPTER_36490 CDS
T06115
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sted
Sporomusa termitida
Pathway
sted03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sted00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPTER_36490 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sted03019
]
SPTER_36490 (cshA_2)
03009 Ribosome biogenesis [BR:
sted03009
]
SPTER_36490 (cshA_2)
Enzymes [BR:
sted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPTER_36490 (cshA_2)
Messenger RNA biogenesis [BR:
sted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPTER_36490 (cshA_2)
Ribosome biogenesis [BR:
sted03009
]
Prokaryotic type
rRNA helicases
SPTER_36490 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDR82225
UniProt:
A0A517DXZ3
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All DBs
Position
3817248..3818663
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AA seq
471 aa
AA seq
DB search
MEKFKELGISDLTIRALTDMGFEEPTPIQEQAIPTLLTGRDLVGQAQTGTGKTAAFGIPL
LQNLKNILGGIQGIVLTPTRELAIQVAEELNKLGQFSQIRALPIYGGQDIQRQIRALQRK
PHIIVATPGRLMDHMDRRTIRLNDIKMVVLDEADEMLNMGFIEDIEKILSTTPDSRQTLL
FSATMPRQIQNLAQKFLKDPVLISTKSKEVTVPLIEQHYYELHDRQKFDVLCRLLDIQSP
ELAIVFGRTKRRVDELTEALKKRGYSAEGIHGDLTQAKRDAVLRQFREGIVDILVATDVA
ARGLDVSGVTHVYNFDIPQDPESYVHRVGRTGRAGQTGLATTFVIPRELEQLRSIERITK
RKIVRMTVPTVNDAIEGQQRLAIEKLLNQIEEGNLERYRGRAEELLAETDSVSLLSAALK
LLTKEPDNTPIKITEEAPLRTRSFGSKRRQPEHRKDTASGKPRYKTGGYKK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaattcaaagagctaggaattagtgatttgacaattcgggctcttactgatatg
ggctttgaagaaccaactcccatccaggaacaggctattcccaccttgcttacaggcagg
gatttagtcggacaggcacaaacaggcacaggcaagacagccgcatttggtattccttta
ttacaaaacctgaaaaacatcctcggtggtattcagggcatcgtattaaccccgacccgc
gaactggcgattcaggttgcggaagagttgaataaacttggccagttctcacaaattcgc
gccctgcctatttacggcggacaggacatacaacggcagatcagagccctgcaaagaaag
ccgcacattattgtcgcaaccccgggccggctgatggatcacatggaccggcgcaccatc
aggcttaacgacatcaaaatggtggtgctcgatgaagccgacgagatgctcaacatgggt
tttattgaggatattgagaaaatcctgagcactacccctgattcacgccagactttgctg
ttttcggcaaccatgcccagacagattcaaaacctggcgcaaaaatttctgaaagatcct
gtccttatcagtactaaatccaaagaagtcactgttccgcttattgaacagcattattac
gaactgcacgacaggcagaaatttgacgtactttgccgtctcctggacatccagtcgccg
gaactggctatcgttttcggcaggaccaaacgccgggtggatgagttgaccgaggcgtta
aaaaaacgcggctattcggcggaaggcattcatggcgacctgactcaggctaagcgggat
gccgtactccggcagttcagagaaggtatcgtcgatattttagtggccacagatgttgcc
gccagaggtctcgatgtcagcggcgttacccatgtatataattttgatatccctcaggac
cccgaaagttatgtacaccgcgtcggccgtaccggccgggccggccaaaccggcttggca
accacctttgtcattccccgcgagctggaacagcttcgttccattgaacgaattaccaag
cggaaaatcgtgcgcatgaccgtccccaccgtcaatgatgctatcgaaggccagcaacgc
ctggccatcgagaagctgcttaaccagatcgaggaaggtaacctggaacgctatcggggc
cgggccgaggaactgctcgctgagaccgactctgtatccctgctgtcagcggcgttaaag
ctattaaccaaggaacctgacaacactcccattaaaattacggaagaggcaccattacgg
acccgctcctttggcagcaaacgccgccagccagagcaccggaaagatactgcttccggc
aagccacgttataaaacaggcggttacaaaaaataa
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