Sporomusa termitida: SPTER_37820
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Entry
SPTER_37820 CDS
T06115
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sted
Sporomusa termitida
Pathway
sted03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sted00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPTER_37820 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sted03019
]
SPTER_37820 (dbpA)
03009 Ribosome biogenesis [BR:
sted03009
]
SPTER_37820 (dbpA)
Enzymes [BR:
sted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPTER_37820 (dbpA)
Messenger RNA biogenesis [BR:
sted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPTER_37820 (dbpA)
Ribosome biogenesis [BR:
sted03009
]
Prokaryotic type
rRNA helicases
SPTER_37820 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Terminase_6N
AAA_19
SecA_DEAD
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QDR82357
UniProt:
A0A517DYC7
LinkDB
All DBs
Position
complement(3957172..3958611)
Genome browser
AA seq
479 aa
AA seq
DB search
MKIIDGFSKEIKKALVTLGYETLTEVQTQVIPLVFAEQDIIVQSQTGSGKTAAFAIPVCE
KIAIEQRSPQALVLTPTRELAVQVKQDIANIGRFKKIRCAAIYGRQPMAIQRRELSQRVH
VIVGTPGRTFDHTVSGSINLAAIKYLIIDEADKMLDMGFIEQVEAIIAKLPGNRVTLVFS
ATMPEQIQAICSRYMLAPVRLAVESASPAAATIQQGYYEVEESGKLRLVKKIAVTERPDS
CILFCNTREKAELVAAELKHAGYLCGTLHGGMEQRERLAAIQGFKRGEFRFLIATDVAAR
GIHVAEIALVINYDFPLDHEGYVHRIGRTGRAGNAGAALTFVTLAERRALAAIEEFVQYK
IPRLEQPTGAAVERGNMISEHDKAKPAYKPDISDKLNSEITRIRINAGKKTKMRPGDILG
AVTAIAGVSAGDIGIIDVQETCSYVEILDGKGPLVMAALQATKIKGRLYTTKQVGFRTI
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
ttgaagatcatagacggatttagtaaagaaataaaaaaggcattggtaaccttaggctat
gaaacactgactgaggttcagacacaagtgatacccctggtttttgcagagcaggatatt
attgtgcaatcacagaccggcagtggcaagacggctgcttttgccatcccggtttgtgaa
aagatcgcaatagagcaaaggagtccgcaggccttagtgcttacaccaacccgggaattg
gctgtacaggtaaaacaggatattgctaatatcggacggtttaagaaaataaggtgtgct
gctatttacggccggcaaccgatggcgatacaaagaagagagttaagccagcgggttcat
gttattgtcggtacgccgggcagaacgtttgatcatacggtaagcggtagtatcaacctg
gctgcaatcaaatatctgattattgatgaagccgacaaaatgctggatatgggctttatt
gaacaggttgaagcaattatcgccaagctgcccgggaacagggttactttggtgttttcc
gcaacaatgcctgagcaaatccaggcgatatgcagtagatacatgctggcgccggtgagg
ctggcggttgagtcggcaagcccggctgcagcaacaattcagcagggctactatgaggtt
gaagaaagcggcaaactcaggcttgtcaaaaagatagcggttactgaacggccggatagc
tgcattttgttttgcaacaccagggaaaaagcggaactggtggcggcggaactaaaacat
gccggctatctctgtggaaccctccatggcggaatggagcaaagggagcggttagcggcc
attcaaggctttaaaagaggcgagtttcgctttctgattgctaccgatgtggccgcacgg
ggaattcatgtggcggagatcgcgctggtgatcaattatgattttcctctggatcatgag
ggctatgttcaccgtattggccggacagggcgggcgggaaatgcaggcgcggcgctaacc
tttgtcaccctggctgaacgaagggccttagcggcaatcgaggaatttgtgcaatataaa
atacccaggctggaacagcccacaggggcagcggttgagcgtggcaatatgatttctgag
catgataaggctaagccggcgtacaaaccggatatcagtgacaaactaaatagtgagatt
accagaattcgtatcaatgccggtaaaaaaactaaaatgagaccgggagatatcctggga
gccgtcactgccattgccggggttagcgccggggatattgggataattgatgttcaggag
acctgctcgtatgtagagatcctggacggcaaaggcccgctggtgatggctgccctccag
gctacaaagattaaaggcaggctatatacaacaaaacaagtaggcttccggactatttaa
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