Streptomyces tendae: F3L20_06080
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Entry
F3L20_06080 CDS
T09112
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stee
Streptomyces tendae
Pathway
stee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F3L20_06080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stee03021
]
F3L20_06080
03019 Messenger RNA biogenesis [BR:
stee03019
]
F3L20_06080
Transcription machinery [BR:
stee03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F3L20_06080
Messenger RNA biogenesis [BR:
stee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F3L20_06080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QER85500
UniProt:
A0ABX5ZM92
LinkDB
All DBs
Position
1276816..1278882
Genome browser
AA seq
688 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAAGSGAPSADAPAKAEAAGETKPKRRATSRTRTGDTAEKAEKAG
KKAEAKDEQAPADKAAAQQQIEIPGQPSPKASDTEQAAESAPAERRRRRATAEAGAPAAA
AETITAEAKTETKNDNPAQQQGEGKSDHDGGEGRRRDRRDRDRGRDRGDRGDRGDRGDRG
DRGDRRGKGDDQQQSQGGGRQQNQQGGGNRQDDGYDDDGSGRRGRRGRYRDRRGRRGRDE
VQEPQINEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTG
AVRQPKDGERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTT
RIIDLVSPIGKGQRGLIVAPPKTGKTMIMQAVANAITHNNPECHLMVVLVDERPEEVTDM
QRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAP
ASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTG
NMELKLDRKLADKRIFPAVDVDASGTRKEEILLGNEELAVVWKLRRVLHALDQQQAIELL
LDKMKQTKSNVEFLMQIQKTTPAPGNGD
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcttccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcagcaggtcgcatccggcctcggtatcaggggcacc
gcgcgcatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccgccggttcg
ggcgccccctccgcggacgccccggccaaggccgaggccgccggcgagaccaagcccaag
cgccgcgccacctcccgcacccgcacgggtgacacggccgagaaggcggagaaggccggc
aagaaggccgaggccaaggacgagcaggcgcccgccgacaaggccgcggcgcagcagcag
atcgagatccccggccagccctcgccgaaggcctccgacaccgagcaggccgccgagagc
gcccccgccgagcgccgccgccgtcgcgccaccgccgaggccggcgccccggccgccgcg
gccgagacgatcacggccgaggcgaagaccgagaccaagaacgacaacccggcgcagcag
cagggtgagggcaagtccgaccacgacggcggcgagggccgccgccgcgaccggcgcgac
cgtgaccgcggccgcgaccgcggcgaccgtggtgaccgcggcgaccgaggtgaccgcggc
gaccgtggtgaccgccggggcaagggcgacgaccagcagcagagccagggcggcggccgt
cagcagaaccagcagggtggcgggaaccgtcaggacgacgggtacgacgacgacggtagc
ggccgccgtggccgtcgcggccgctaccgcgaccgccgtggccgccgtggccgcgacgag
gtgcaggaaccgcagatcaacgaggacgacgtcctcatcccggtcgcgggcatcctggac
atcctcgacaactacgccttcatccggacctccggctacctgcccggcccgaacgacgtg
tacgtctccctcgcccaggtccgcaagaacggcctccgcaagggcgaccacgtcaccggt
gcggtccgccagcccaaggacggcgagcggcgcgagaagttcaacgcgctggtccgcctg
gactccgtcaacggcatggcgcccgaacacggccgcggccgcccggagttcaacaagctg
accccgctgtacccgcaggaccggctgcgcctggagaccgacccgggcgtactgaccacg
cggatcatcgacctcgtgtcgccgatcggcaagggccagcgcggtctgatcgtggccccg
ccgaagaccggcaagaccatgatcatgcaggcggtcgccaacgcgatcacccacaacaac
cccgagtgccacctgatggtcgtcctcgtcgacgagcgtccggaagaggtcaccgacatg
cagcggtcggtgaagggcgaggtcatctcctcgaccttcgaccgtccggccgaggaccac
accacggtcgccgagctcgccatcgagcgcgccaagcgcctggtggagctgggtcacgac
gtcgtcgtgctgctcgactcgatcacgcgtctgggccgtgcgtacaacctcgccgccccg
gcctccggccgcatcctgtccggtggtgtcgactcgaccgccctgtacccgccgaagcgc
ttcttcggtgcggcccgcaacatcgaggacggcggatcgctgaccatcctcgccaccgcc
ctggtggacaccgggtcccgcatggacgaggtgatcttcgaggagttcaagggcaccggc
aacatggagctcaagctcgaccggaagctcgccgacaagcgcatcttccccgcggtggac
gtcgacgcgtccggcacccgtaaggaagagatcctgctcggcaacgaggagctggcggtc
gtctggaagctgcgccgcgtgctgcacgcgctggaccagcagcaggcgatcgagctgctc
ctcgacaagatgaagcagaccaagtcgaacgtcgagttcctgatgcagatccagaagacg
acgccggcgccgggcaacggcgactga
DBGET
integrated database retrieval system
