Streptomyces tendae: F3L20_21350
Help
Entry
F3L20_21350 CDS
T09112
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stee
Streptomyces tendae
Pathway
stee03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F3L20_21350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stee03400
]
F3L20_21350
Enzymes [BR:
stee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F3L20_21350
DNA repair and recombination proteins [BR:
stee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F3L20_21350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QER88043
UniProt:
A0A5P1YMI5
LinkDB
All DBs
Position
4650737..4651717
Genome browser
AA seq
326 aa
AA seq
DB search
MTLPLIPPMLATPGRLPPPAADARWAYETKQDGQRAVVYLPGDGSVVLRARSGQEITGAY
PELRPLATALGSRPAVLDGEVLALDADGRASFQLLQSRMGLAHSPARAARRAETVPVHLI
LFDVMHLDGRPLVREPYVRRREALEDLGLGGPAWSTPAALVGHGPEALRATVEHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVLVGGWLPGKGRLTGLPGAVLVGQRAAGRLRYV
GGVGTGWSETERTELAALLRAAASDVCPFDPVPAVQGAHWVVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEEAAADLPDDLA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtgaccctgccgctgatcccgcccatgctcgccacgcccggccggctgccgccccccgcg
gcggacgcacgctgggcgtacgagaccaagcaggacggccagcgggcggtggtctacctc
ccgggggacggcagtgtcgtcctccgcgcgcggtccggccaggagatcaccggcgcgtac
cccgagctgcgcccgctggccaccgccctcggctcccggccggccgtgctggacggcgag
gtgctggccctcgacgcggacggccgggccagcttccagctgctgcagtcccggatgggc
ctggcacactccccggcccgcgcggcccggcgggcggagacagtgccggtgcacctgatc
ctgttcgacgtgatgcacctcgacggccgcccgctggtccgcgagccctacgtccgccgg
cgcgaggcactggaggacctgggactcggcggtcccgcctggtccaccccggccgcgctc
gtgggccacggcccggaggcactgcgggccacggtcgaacacggcctggaggggctggtc
tgcaagcggctggactccgtgtacgagccgggggtccgctcccgtgcctggatcaagatc
cgcaacatgcgcagcgaggatgtgctggtcggaggctggttgccgggcaaggggcggctg
accggactgccgggcgccgtcctggtcggccagcgggcggcgggccggctgcggtacgtc
ggcggtgtgggcaccggctggagcgagaccgaacgcacggaactggccgccctgttgcgg
gccgccgcgagcgacgtctgccccttcgacccggtgccggccgtccagggcgcccactgg
gtggtgccccggctggtcggcgaggtgcgctacagcacccgcacccgtgaggggatgctg
cgccagccgtcctggctgcggctgcggccggacctcgcgcccgaggaggccgcggccgac
cttcccgacgacctggcgtga
DBGET
integrated database retrieval system