Streptomyces tendae: F3L20_30805
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Entry
F3L20_30805 CDS
T09112
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
stee
Streptomyces tendae
Brite
KEGG Orthology (KO) [BR:
stee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stee03019
]
F3L20_30805 (hrpA)
Enzymes [BR:
stee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F3L20_30805 (hrpA)
Messenger RNA biogenesis [BR:
stee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F3L20_30805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
SLFN-g3_helicase
TsaE
NTPase_1
PhoH
MetJ
Motif
Other DBs
NCBI-ProteinID:
QER89670
LinkDB
All DBs
Position
6718614..6722591
Genome browser
AA seq
1325 aa
AA seq
DB search
MSTHSAPALGSLASRLTELSLRDAHRLGRRLEGARKIRKPEARAAVFGEIEAEVAAAEER
MAARRARVPEVRYPEQLPVSQKKDDIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRG
VRGMIGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIIEVSGRTYPVEVRYRPLLEEDSDDADRDQITAITDAVEELMAEGPGDILVFLS
GEREIRDTADALTKKRYRSTEVLPLYARLSHAEQHRVFQQHGGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFL
ARPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLHELGALDPT
QKDPRKRLTQTGRKLAQLPVDPRLARMVLEADRNGCAREVMVIAAALSIQDPRERPSDKQ
TQADQQHARFRDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEFLNFLRIREWQDIY
TQLRTVAKQMGIHLNEEDAPADRIHVSLLSGLLSHIGMKDVKESKDSGQGGRRDGGRNEY
LGARNAKFAVFPGSALFKKPPRFVMSAELVETSRLWARVNAKIEPEWVEPLAEHLLKRTY
SEPHWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRELFIRNALVEGDWRTHHK
FYADNRKLLTEVEELEHRARRRDILVDDETLFDFYDRRIPDHVVSGAHFDSWWKHKRREE
PEFLDFEREMLIRESADAVTKADYPDTWRQGPLKFRVTYQFEPGADADGVTVHIPLQVLN
QVTDEGFDWQIPGLREDVVTELIRSLPKPIRRNYVPAPNYAKAFLERAVPLQEPLTVTMA
RELKRMVGVPFEADDFDWSRVPDHLKVTFRIVDERRRTLAEDKDLEALQLKLRPKARKAL
SQAAAATAQREGGESLERRGLTDWTIGSLTRVFETRRAGQPVKAYPALVDDGDSVSVRLF
DSEAEQAEEMWKGTRRLILLGIPVNPAKFASEKLTNPQKLALSANPHGSVQALFDDCATA
AADKLIADFGGPVWDEESFRKLFDKVRAEIVDTTVRAVGQVQQVLAAWQACERRLKGVSS
PALLPNLQDVRKQLDGLVRPGFVTGTGLRRLPDLMRYLVAADRRLQQMPTNVQRDTTRMA
KVHEMQDEYAWLLEQMPQGRPVPQQVRDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAI
DAAVP
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcactctgcccccgccctcggctcccttgcctcccgcctcaccgaactgtcg
ctgcgcgatgcgcaccggctcggacggcggctcgagggggcccgcaagatccgtaagccg
gaggcccgtgccgccgtgttcggtgagatcgaggcggaggtcgccgcggccgaggagcgg
atggccgcgcgccgggcccgggtgccggaggtccggtatcccgagcagctgcccgtcagc
cagaagaaggacgacatcgccgaggccatccgcgatcaccaggtggtgatcgtcgccggc
gagacgggctccgggaagaccacgcagatcccgaagatctgcatggagctgggccggggc
gtccgcggcatgatcgggcacacccagccccggcggatcgcggcccgtacggtggccgag
cgggtcgccgaggagctggacaccccgctcggggaggccgtcggctggaaggtccgcttc
accgaccaggtgaacccggacgccaccttcgtcaagctgatgacggacggcatcctgctc
gcggagatccagaccgaccgcgaactgcgcgcctacgacacgatcatcatcgacgaggcg
cacgagcggtcgctgaacatcgacttcctgctcggctatctcgcgcagctgctgccgaaa
cgtcccgacctcaaggtcgtcatcacctcggcgaccatcgatccggagcgtttctcccgg
cacttcggcgacgccccgatcatcgaggtcagcgggcggacctatccggtggaggtgcgc
taccggccgctgctggaggaggactccgacgacgccgaccgcgaccagatcaccgcgatc
accgacgccgtcgaggagctgatggcggagggacccggcgacatcctggtgttcctctcc
ggcgagcgggagatccgggacacggcagacgcgctgaccaagaagcggtaccggtccacc
gaggtgctgccgctgtacgcccggctgtcgcacgccgagcagcaccgggtgttccagcag
cacggcggacgccggatcgtgctggcgaccaacgtggccgagacctccctcaccgtcccc
ggtatcaagtacgtcatcgaccccggcttcgcccgcatctcgcgctacagccaccgcacc
aaggtgcagcggctgccgatcgagccggtctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacctcggacggcatctgcatccggctgtacagcgaggacgacttcctc
gcccgtccggagttcaccgacgcggagatcctgcggacgaacctcgcctcggtcatcctg
cagatgacggcggcgggcctcggcgagatcgagaagttcccgttcatcgacccgccggac
caccgcaacatccgcgacggcgtccagctgctgcacgaactgggcgccctcgaccccacg
cagaaggacccgcgcaagcgcctcacccagaccggacggaaactggcacagctgccggtc
gacccgcgtctggcacgcatggtgctggaggcggaccgcaacggctgcgcccgcgaggtc
atggtcatcgcggcggccctgtcgatccaggacccgcgcgagcggccctccgacaagcag
acgcaggccgaccagcagcacgcccggttccgcgacgagaccagcgacttcctggccttc
ctcaacctgtggcggtacgtccgcgagcagcagaaggagcgcggctcgtcgtcgttccgg
cggatgtgcaagcaggagttcctgaacttcctgcggatccgcgagtggcaggacatctac
acgcagctgcgcaccgtcgccaagcagatgggcatccacctcaacgaggaggacgccccc
gccgaccgcatccacgtctccctgctgtccggtctgctctcgcacatcggcatgaaggac
gtgaaggagtccaaggactccggccagggcggccggcgcgacggcggacgcaacgagtac
ctcggcgcgcgcaacgccaagttcgccgtcttcccgggctccgcgctgttcaagaagccg
ccgcggttcgtgatgtccgcggagctggtggagacgtcccggctgtgggcgcgggtcaac
gcgaagatcgagccggagtgggtggagccgctcgcggagcacctgctcaagcgcacctac
agcgagccgcactgggagaaggaccaggcggccgtgatggcctacgagaaggtcacgctc
tacggcgtgcccatcgtggcgcagcgcaaggtgaactacgggcggatcgacccggaggtc
tcccgcgagctgttcatccggaacgcgctggtcgagggcgactggcggacacaccacaag
ttctacgcggacaaccgcaagctgctgaccgaggtcgaggagctggagcaccgggcccgg
cgccgggacatcctggtcgacgacgagaccctgttcgacttctacgaccggcgaatcccc
gaccacgtcgtctcgggggcgcacttcgactcgtggtggaagcacaagcggcgcgaggag
ccggagttcctcgacttcgagcgggagatgctgatccgtgagtcggcggacgcggtcacc
aaggccgactaccccgacacgtggcggcagggcccgctgaagttccgcgtgacgtaccag
ttcgagccgggggcggacgcggacggtgtgacggtccacatcccgctccaggtgctgaac
caggtgacggacgagggcttcgactggcagatcccgggcctgcgggaggacgtggtcacg
gagctgatccggtccctccccaagccgatccggcggaactacgtgccggcgccgaactac
gccaaggcgttcctggagcgcgcggtaccgctgcaggagccgctgaccgtcacgatggcc
cgtgagctgaagcgcatggtcggcgtgccgttcgaggcggacgacttcgactggtcgcgg
gtcccggaccacttgaaggtgacgttccggatcgtcgacgaacggcgccggacgctcgcc
gaggacaaggacctggaggcgctccaactcaagcttcggcccaaggcgcgcaaggcgctg
tcgcaggcggccgccgccacggcccagcgtgagggcggggagtcgctggagcgccgcggg
ctgacggactggacgataggttcgctgacccgggtgttcgagacgcgtcgggccggccag
ccggtgaaggcgtacccggccctggtggacgacggcgactcggtgtcggtccggttgttc
gactcggaggccgagcaggcggaggagatgtggaagggcacccggcggctgatcctgctg
ggcatcccggtcaaccccgcgaagttcgcgtccgaaaagctgaccaaccctcagaagctg
gcgctgtccgccaatccgcacggctccgtgcaggcgctgttcgacgactgcgccacggcc
gcggcggacaagctgatcgcggacttcggcggcccggtgtgggacgaggagtcgttccgc
aagctgttcgacaaggtgcgggcggagatcgtcgacaccacggtccgcgcggtgggtcag
gtccagcaggtcctggccgcctggcaggcctgtgagcgccgtctgaagggcgtgagcagc
cccgcgctgctgccgaaccttcaggacgtgcggaagcagctggacggactggtacggccg
gggttcgtgactgggacggggctgcggcggctgccggacctgatgcggtacctggtggcc
gcggaccgccgactgcagcagatgccgacgaacgtgcagcgggacactacgcgtatggcc
aaggtccacgagatgcaggacgagtacgcctggctcctggagcagatgccccaggggcgg
cccgtgccgcagcaggtgcgggacatccgctggatgatcgaggagctgcgggtcagctac
ttcgcccacgcgctcggcacggcctacccggtgtcggacaagcggatcgtgaaggcgatc
gacgcggcggtcccgtga
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