Stenotrophomonas sp. SBJS02: FQS62_020110
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Entry
FQS62_020110 CDS
T10678
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
stej Stenotrophomonas sp. SBJS02
Pathway
stej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FQS62_020110 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stej03019
]
FQS62_020110 (rhlB)
Enzymes [BR:
stej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FQS62_020110 (rhlB)
Messenger RNA biogenesis [BR:
stej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FQS62_020110 (rhlB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WAP01578
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All DBs
Position
complement(4351869..4353593)
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AA seq
574 aa
AA seq
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MSDKPLTDLTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVVNRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPA
DDEKIPLLLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMGLPDIEAYIEQKIPSEPVTKELLTPLPRPERPAPAAGEEGEDNESVGQIFREA
REARAAEEERRGGGRSGGRSGGGGGRGGRDGERSGERRSRGPRKPRVEGEQGAAAPAAGA
EGATAQAPRPPRPPRAEGAPEGAVDGEHKPRKRRRRRHGRPVEGAEGVQSAAGNGASPVT
PVQVVAKPVRTAADTGDSFLTRIGRKIRRMLSGN
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgaccttctcctccttcgagctgcatccggccctg
caggccggccttgaaggagccggattcacccgctgcacgccgatccaggcgctgaccctg
ccggtcgcgctgcccggtggtgatgttgccggccaggcccagaccggcaccggcaagacc
ctggccttcctggtcgctgtcgtgaaccgcctgctgacgcgtccggccctggctgaccgc
aagccggaagatccgcgcgcgctgatcctcgccccgacccgcgaactggccatccagatc
cacaaggatgcagtgaagttcggctccgacctgggcctgcgtttcgcgctggtctacggc
ggcgtggattacgacaagcagcgcgaactgctgcagcagggcgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtgaagcagcacaaggtggtatcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcgccgcatgcccgagcgcaccacccgccagaccctgctgttcagtgcc
accctcagccaccgcgtgctggagctggcctacgagcacatgaacgaaccgcagaagctg
gtggttgaagccgagaccatcaccgccgcgcgcgtgcgccagcgcatctatttcccggcc
gacgacgagaagattccgttgctgttgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtcttcgtcaacaccaaggtgttcgtcgaacgcgttgcccgttcgctggaaaaggcc
ggctaccgtgtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagagcctgctc
aaccgcttccagaagggccagctggaaatcctggtggccaccgacgtggccgcgcgcggc
ctgcacatcgatggcatcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtgcaccgcatcggccgcaccgcgcgcctgggcgaagaaggtgatgcgatcagcttc
gcctgcgaacgctacgccatgggcctgccggacatcgaggcctacatcgagcagaagatt
ccgtccgagccggtcaccaaggaactgttgaccccgctgccgcgcccggaacgcccggct
ccggctgcaggcgaggaaggcgaggacaacgaaagcgtcggccagatcttccgcgaagcg
cgcgaagcccgtgccgccgaggaagagcgtcggggcggtggccgtagtggtggccgttcc
ggcggtggtggtggccgtggtggccgtgacggtgagcgcagcggcgaacgccgctcgcgt
ggcccgcgcaagccgcgcgtggaaggcgagcagggcgctgccgccccggccgccggcgcc
gaaggtgccaccgcccaggctccgcgtccgccgcgcccgccgcgtgccgaaggcgcaccg
gaaggtgcggtggacggcgagcacaagccgcgcaagcgccgtcgtcgtcgccatggccgt
ccggtcgagggtgccgagggcgtgcagagcgccgccggcaatggcgccagcccggtcacc
ccggtgcaggtggtggccaagccggtgcgtacggctgccgatactggcgattcgttcctg
acccgcatcggccgcaagatccgccggatgctgtcgggcaactaa
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