Stenotrophomonas sp. KCTC 12332: AXG53_02470
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Entry
AXG53_02470 CDS
T04408
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
stek
Stenotrophomonas sp. KCTC 12332
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stek03016
]
AXG53_02470
Enzymes [BR:
stek01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AXG53_02470
Transfer RNA biogenesis [BR:
stek03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AXG53_02470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AMJ55625
UniProt:
A0A126NF86
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All DBs
Position
560184..561266
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AA seq
360 aa
AA seq
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MAYWIKHPAELEERYRQRPSRIGLDTEFIRERTYWPQLALVQMAVGDEILLIDPLIPGMC
EALKPWLTDTSITKIMHSASEDLVAFKCACDALPRPLFDTQIGAALAGIGGGMGYQKLVA
EITGVTLPKGETRSDWLKRPLSDAQLEYAADDVEYLFALHDTISAKLQAADRLQWLQDDG
ERLLASVEGDEGEHWPHLSMRSSQVLERDAQLRLLRLLRWRDQQARSSDKPRSWILDNEL
ASLLARTPPADYDSMLKLFGRFPKAPRKLAQPLWEALNTPLADEAEAPMALPATDGNKNT
IKRLQDAVSKRSAELELPDGLLASRKHLEALLESGNWPTALAGWRQQQLEPVLRPLLPNT
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
gtggcttactggatcaaacacccggcggagttggaagaacgctaccgccagcgcccgagc
cggatcgggctggacaccgaattcatccgcgaacgcacctattggccgcagctggccttg
gtgcagatggcagtcggcgacgaaatcctgctgatcgacccgctgatacccggcatgtgc
gaggcgctgaaaccctggctgaccgacacctcgatcaccaagatcatgcacagcgccagc
gaagacctggtggccttcaagtgcgcctgcgacgcgctaccgcggccgctgttcgacacc
cagatcggtgccgccctggccggcatcggcggcggcatgggctaccagaagctggtggcc
gagatcaccggcgtcaccctgcccaagggcgagacccgctcggactggctcaagcgcccg
ctcagcgatgcccagctggaatacgccgccgacgacgtggaatacctgttcgccctgcac
gacaccatcagcgccaagctgcaggcggcagaccgcctgcaatggctgcaggacgatggc
gagcgcctgctggccagcgtcgaaggcgacgaaggcgagcattggccgcatctgtcgatg
cgttcctcgcaggtcctggaacgcgacgcccagctgcgcctgctgcgcctgctgcgttgg
cgtgaccagcaggctcgcagcagcgacaaaccgcgcagctggatcctcgacaacgagctg
gccagcctgctggcacgcaccccgccggctgactacgacagcatgctcaagctgttcggt
cgcttccccaaggccccgcggaaactggcgcagccgctgtgggaagccctcaacaccccg
cttgccgacgaagctgaagcaccgatggccctgcccgccaccgacggcaacaagaacacc
atcaagcgcctgcaggacgcagtgagcaagcgcagcgccgagctggaactgcccgacggc
ctgctggcctcgcgcaagcacctggaagcactgttggaaagcggcaactggcccaccgca
ctggccggctggcgccagcaacaattggaaccggtgctgcggccactgctgcccaacacc
tga
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