Stenotrophomonas sp. KCTC 12332: AXG53_05280
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Entry
AXG53_05280 CDS
T04408
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
stek
Stenotrophomonas sp. KCTC 12332
Pathway
stek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXG53_05280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stek03021
]
AXG53_05280
03400 DNA repair and recombination proteins [BR:
stek03400
]
AXG53_05280
Enzymes [BR:
stek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXG53_05280
Transcription machinery [BR:
stek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXG53_05280
DNA repair and recombination proteins [BR:
stek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXG53_05280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Motif
Other DBs
NCBI-ProteinID:
AMJ56121
UniProt:
A0A126NLJ9
LinkDB
All DBs
Position
complement(1238140..1238439)
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AA seq
99 aa
AA seq
DB search
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATIDNSETEDKPTVLALREIAARRI
DNDLIEEVEKSERERAEREALEWAAAEVVADEDMSKNDD
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcattaccgtagaagattgcctggaagtcgttaacaaccgttttgagctggtc
atgatggcgtccaagcgtgcccgtcagctggccaatggtgtccaggcgacgatcgacaac
agcgagaccgaggacaagccgaccgtgttggcgctgcgcgagatcgccgcccgtcgcatc
gacaacgacctgatcgaggaagtcgagaagtccgagcgtgagcgcgccgagcgtgaagcg
cttgagtgggctgccgctgaagtggttgccgacgaagacatgtccaagaacgacgattga
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