Stenotrophomonas sp. KCTC 12332: AXG53_07680
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Entry
AXG53_07680 CDS
T04408
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stek
Stenotrophomonas sp. KCTC 12332
Pathway
stek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG53_07680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stek03021
]
AXG53_07680
03019 Messenger RNA biogenesis [BR:
stek03019
]
AXG53_07680
Transcription machinery [BR:
stek03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AXG53_07680
Messenger RNA biogenesis [BR:
stek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AXG53_07680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
OB_RNB
ResIII
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
AMJ56541
UniProt:
A0A126NMJ7
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All DBs
Position
1808474..1810243
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AA seq
589 aa
AA seq
DB search
MSENTPSETGSTDAPVEKRVRKPRVAKAVENADSGASAPAQPALPLPAAPAAPAPVAAAP
APTPTAPPPAPAAAASSNDGQAQAPASSGDNAPQGGGQDGGDGNQQRYGQQNQQNQQGQG
QGQGNRRDRFRNRRDRDRNRPRDDNGMSNDGGNEPFVPRSMPGVPEGFPVYSLSDLKRMP
AQKLLEIAEQLQISEGVARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAE
ASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPIEASKN
KVLFENLTPLFPRKRFTLERGNGSSEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQ
QIATAITTNHPEVHMIVLLVDERPEEVTEMQRTVRGEVVSSTFDEPAARHVQVAEMVIER
AKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEE
GGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRITEKRVYPAIDINRSGTRRED
LLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgagaacactccttccgaaaccgggagcaccgacgctcctgtcgagaagcgcgtg
cgcaagccgcgtgttgccaaagcagttgaaaacgccgatagcggtgcctctgctcccgcc
cagccggccctgccgttgccagccgccccggccgctccggcaccggtagccgccgcaccc
gcacctacccccactgctccgccgcccgcgcccgccgcggcagcgtccagcaatgatggc
caggcccaggcacccgcaagctcaggcgacaacgccccgcaaggtggcggccaggacggc
ggtgacggcaaccagcagcgctacggccagcagaatcagcagaatcagcagggccaaggc
cagggtcagggcaaccgccgcgaccgtttccgcaaccgtcgcgaccgtgaccgcaaccgt
ccgcgtgacgacaacggcatgagcaacgacggcggcaacgagccgttcgtaccgcgttcg
atgccgggcgtgccggaaggcttcccggtctactcgctgagcgacctgaagcggatgccg
gcacagaagctgctggaaatcgccgagcagctgcagatctccgaaggcgtggcccgtgcc
cgcaagcaggatgtgatcttcgccctgctcaaggtgctgacccgccacggtgacggcgtc
gccgccgacggcgtactggaaatcctgccggacggcttcggtttcctgcgcgcagccgag
gccagctacctggccggcccggacgacacctacatctcgcccagccagatccgccgcttc
aacctgcgtaccggcgaccacctgtccggccgcatccgcttcccgaaggatggcgagcgt
tacttcgcgctgtcgatcgtggacaccatcaacggtgagccgatcgaagcctcgaagaac
aaggtgctgttcgaaaacctgaccccgctgttcccgcgcaagcgcttcacgcttgagcgc
ggcaatggctcctcggaagacatcaccggtcgtatcctcgacctgatggcaccgcagggc
aagggccagcgcgcattgatcgtctcgccgccgaaggccggtaagacgatgatgatgcag
cagatcgccacggccatcaccaccaatcatccggaagtgcacatgatcgtgctgctggtg
gatgagcgcccggaagaagtgaccgaaatgcagcgcacggtgcgcggcgaagtggtctcc
tctaccttcgacgagccggccgcgcgccacgtgcaggttgccgaaatggtgatcgagcgt
gccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctggactcgatcacccgc
ctggcccgcgcctacaacaacgtcgtaccgagctccggcaaggtcctgactggtggtgtg
gacgccaacgccctgcaccgtccgaagcgtttcttcggtgcggcgcgtaatgttgaagaa
ggcggctcgctgaccatcatcgccaccgcgctggttgaaaccggctcgaagatggacgaa
gtgatctacgaagaattcaagggcaccggcaacagcgaagtgcatttgaaccgtcgcatc
accgagaagcgcgtctacccggccatcgacatcaaccgttcgggcacccgccgcgaagac
ctgctgatcgagccggagctgctgcagaagatctggatcctgcgcaagctgctgcacccg
atggacgaaatcgccgcgatggaattcctgttggacaagatgaagaacaccaagtccaac
gacgagttcttcggttcgatgaagcgctga
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