Stenotrophomonas sp. KCTC 12332: AXG53_12370
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Entry
AXG53_12370 CDS
T04408
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
stek
Stenotrophomonas sp. KCTC 12332
Pathway
stek02020
Two-component system
stek02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AXG53_12370
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AXG53_12370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stek03021
]
AXG53_12370
Transcription machinery [BR:
stek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AXG53_12370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_11
HTH_IclR
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AMJ57347
LinkDB
All DBs
Position
2923929..2925362
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AA seq
477 aa
AA seq
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MKARLQTSMGQSLVMTPQLRQAIRLLQMSSTELELELTEAVETNPLLEWAENTDGSDGDD
SPSSSSSDETPIDPAQGDINADGEDWDGGDDDWSSARSSSFDDDGDSSEREQAEDGDTLA
DHLLWQLHLTHLGRCDRAIGVALIDALDEDGYLREPLSAIAQTLLPEIHADEDEILAVLR
QIQRFDPAGVGARTLGECLALQLDTLPTDTPALTLARRIADGPLERLPRAGISGIAQELK
QSVADVEEAVQLLRSLDPRPGKQLGQMSSDTYVVPDCVIWRQRGIWRCALAGHAGPRVVI
NHGYEQLIRRCGDADASYLRAQLQEARWLLKSLQARGETLLRVVSSLLHHQAGFLEFGEQ
ALRPLTLREIAGELELHESTISRAIARKYVRTPRGTLPLRAFFASGIDTEGGGEASSTAI
QSMIRNLIDAENPRKPLSDAKLAEMLKTSGIPVARRTVAKYREAMNICASHERVRIA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctcggctgcagacatcgatgggacagagcctggtgatgacgccgcagttgcgt
caggccatccggctgctgcagatgtccagtaccgagctggagctggaactgaccgaagcg
gtggaaaccaacccgctgctggaatgggccgagaacaccgacggcagtgacggcgacgac
agcccgtccagcagttccagcgacgaaaccccaattgatcccgcacagggtgacatcaac
gccgacggcgaagactgggatggcggcgatgacgactggagcagcgcgcgctccagttcg
ttcgacgacgacggcgacagcagcgaacgcgagcaggccgaagacggcgacacgctcgcc
gatcacctgctgtggcagctgcaccttacgcatctgggccgctgtgatcgcgccatcggt
gtggccctgattgatgccctggacgaagacggctacctgcgcgagccgctgtctgccatc
gcgcagacgctgctgcctgaaatccatgccgacgaagacgagatcctggcagtgctgcgc
cagatccagcgcttcgacccggccggtgtgggcgcgcgcactcttggcgaatgccttgcg
ctgcaactggatacgctgcccaccgatacacccgcactgacgctggccaggcgcattgcc
gacggcccgctggaacggcttccgcgcgccggcatcagcggcatcgcgcaggaactcaag
caatccgttgccgacgtggaagaagccgtgcagctgctgcgctcgctcgatccacgcccg
ggcaagcagctgggccagatgagttcggacacctatgtcgtgcccgactgtgtgatctgg
cgacagcgcggcatctggcgctgtgcgctggccggccatgccggtccgcgcgtagtgatc
aatcatggctacgaacaactgatccgccgctgcggcgatgccgatgccagctatctgcgc
gcgcagctgcaggaagcgcgctggctgctgaagagcctgcaggcgcgtggcgaaaccctg
ctgcgggtggtcagcagcctgctgcatcaccaggccggttttctggaattcggcgagcag
gccctgcgtccgctaacgctgcgtgaaatcgccggcgaactggaactgcacgaatccacc
atttcgcgcgccatcgcccgcaaatacgtacgcaccccgcgcggcaccctgccgctgcgc
gcctttttcgcctcgggtattgataccgaaggcggcggtgaggcttccagcactgcgatc
cagtcgatgatccgcaatctgatcgatgcggaaaacccgcgcaaaccgctttctgacgcc
aagctggctgagatgctcaaaaccagtggcataccggtggcgcggcgcaccgttgcgaag
tatcgtgaggccatgaacatctgtgcctctcacgaacgcgtccgcatcgcctga
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