Stenotrophomonas sp. KCTC 12332: AXG53_13555
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Entry
AXG53_13555 CDS
T04408
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stek
Stenotrophomonas sp. KCTC 12332
Pathway
stek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXG53_13555 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stek03021
]
AXG53_13555 (rpoB)
03400 DNA repair and recombination proteins [BR:
stek03400
]
AXG53_13555 (rpoB)
Enzymes [BR:
stek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXG53_13555 (rpoB)
Transcription machinery [BR:
stek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXG53_13555 (rpoB)
DNA repair and recombination proteins [BR:
stek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXG53_13555 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AMJ58770
LinkDB
All DBs
Position
complement(3151648..3155838)
Genome browser
AA seq
1396 aa
AA seq
DB search
MTSYSYTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENIDPAKRSDHGLHAALKS
VFPISSYSGNAALEYVGYKLGDPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSVLLRALGYNNEEMLAEFFEVNTFHINPD
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHIKQLQASGIAALAVPDDYIVG
RILSHDVVDANTGELLAQANDEISDDQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
GTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEV
TGESVLYDRKYFGERNDEESKRLVAAHGEGSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNKYGFLETPYRKVHDGKVSDEIEFLSAIEENEYVIAQANALTDAKNMLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNALRGGEIVQIDAGRIVVKANENEITDPADAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVANGGANLK
KGDVVSDALLDGLKKSDWFTLRMKDDDASEAIERAQMQIQAHEKEFERRFADKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMADGNTVDICLN
PLGVPSRMNIGQILEVHLGWAAKGLGKRIQGMLEQQRAVSELREFLGKIYNHDSAVSEQR
VDLSQFSDDELINLAKNLTDGVPMATPVFDGAAEDEIREMLNLAYPDGAPETERLGFNTS
KTQMQLYDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFG
GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVL
VKEIRSLAINMELEGG
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgtacaccgaaaaaaagcgcatccgcaaagatttcggcaagcagcgc
tcgatcctcgaggtgccgttcctgctcgcgatccaggttgattcgtaccgcgaatttctg
caggaaaacatcgacccggccaagcgctccgaccacggcctgcatgctgcgctgaagtcg
gtgttcccgatttccagctacagcggcaacgctgccctggaatacgtcggttacaagctg
ggcgacccggtgtttgacgagcgcgagtgccgccagcgtggcatgagctacggcgcgccg
ctgcgcgtcaccgtgcgtctggtcatctacgaccgcgaatcgtccaccaaggcgatcaag
tacgtgaaggagcaggaggtctatctgggcgaaatcccgttgatgaccgacaacggcacc
ttcatcgtcaacggtaccgagcgcgtcatcgtgtcgcagctgcaccgttcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcatcccgtaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgatcgccgccgcaagctgccggtgtcggtgctgctgcgtgcgctgggctac
aacaacgaagagatgctggccgagttcttcgaggtcaacaccttccacatcaacccggac
gaaggcgtgcagctggagctggtgccggagcgtctgcgtggtgaaacgctgaacttcgac
ctggccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcgcgccacatc
aagcagctgcaggcgtcgggcattgccgccctggccgtgccggacgattacatcgtcggc
cgcatcctgtcgcacgacgtggtggacgccaataccggtgaactgctggcccaggccaac
gacgaaatcagcgacgatcagctgcaggcattccgcaaggccggtgtcgatgcggttggc
acgctgtgggtgaacgatctggatcgtggtccgtacctgtccaacaccctgcgcatcgat
ggcaccaagacccagctcgaagcgctggtcgaaatctatcgcatgatgcgtccgggcgag
ccgccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggttggccgcatgaagttcaaccgtcgtgtcggccgcaaggaagtc
accggtgagtcggtgctgtacgaccgcaagtacttcggcgagcgcaacgacgaggaatcc
aagcgcctggtcgccgcgcacggcgaaggttcggacatccttgacgtgatcaaggtgctg
accgagatccgcaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggtgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtcggaaggcttgaccccgcaggagctg
atcaacgccaagccggtggctgcggcgatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggatcagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctcggcg
ctgggcccgggcggcctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatc
aactcgctggccgtgttcgcacgcaccaacaagtacggcttcctggaaaccccgtaccgc
aaggtgcatgacggcaaggtctccgacgagatcgagttcctgtcggccatcgaagaaaac
gagtacgtcatcgcccaggcaaacgccctgaccgatgccaagaacatgctcaccgagcag
ttcgtaccgtgccgcttccagggtgagtcgctgctcaagccgccggcagaagtccacttc
atggacgtctcgccgatgcagaccgtgtcggttgctgcggcactggttccgttcctggag
cacgatgacgcaaaccgcgcactgatgggcgccaacatgcagcgtcaggccgtgccgacc
ctgcgtgcgcagaagccgctggtgggcaccggtatcgaacgcgccgtggcccgtgactcc
ggtgtgaccgtgaacgccctgcgtggcggcgagatcgtgcagatcgacgccggccgcatc
gtggtcaaggccaacgagaacgagatcaccgatccggccgatgccggcgtcgatatctac
aacctgatcaagtacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtg
aacgtgggtgacgtgatcgcgcgcggcgacgtgctggccgatggcccgtccaccgatatc
ggtgaactggcgctgggtcagaacatgctgatcgccttcatgccgtggaacggctacaac
ttcgaagactccatcctgctgtccgagcgtgtggtcgaagaggatcgttacaccacgatc
cacatcgaagaactgacctgcgttgcacgtgacaccaagttggggccggaggaaatttcc
gccgacatcccgaacgtgtccgagcaggcgctgaaccgtctggacgaatccggcgtggtg
tacatcggtgcggaagtgcgcgccggcgacatcatggttggcaaggtgacgccgaagggc
gagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgttaaggacagctcgctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgcacgccagatcgaagaaaac
gagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctcgaaggcgccatc
tacgcacgtctgcgctcgcagatcgtgggtaaggttgccaacggcggcgccaacctgaag
aagggtgacgtggtctccgatgcgctgctggacggcctgaagaagtccgactggttcacc
ctgcgcatgaaggacgatgacgcgtccgaagccatcgaacgtgcccagatgcagatccag
gcacacgagaaggaattcgagcgccgctttgccgacaagcgcggcaagatcactcagggc
gacgatctggcaccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgtcgc
atccagccgggtgacaagatggcaggccgtcacggcaacaagggtgtggtctccaacgtg
gtgccggtcgaagacatgccgtacatggctgacggcaacaccgtggacatctgcttgaac
ccgctgggcgtgccgtcgcgtatgaacatcggccagattctggaagtgcacttgggctgg
gccgcaaagggcctgggcaagcgcatccagggcatgctggaacagcagcgtgcggtcagt
gaactgcgtgagttcctgggcaagatctacaaccatgattcggccgtgtccgaacagcgc
gttgatctgtcccagttcagcgacgacgagctgatcaacctggccaagaacctgaccgac
ggcgtgccgatggcaaccccggtgttcgacggcgcggccgaagacgagatccgcgaaatg
ctgaatctcgcctacccggacggtgccccggaaaccgagcgtctgggcttcaacaccagc
aagacgcagatgcagctgtatgacggccgcaccggcgaagccttcgaccgcaagaccacg
gtcggctacatgcattacctgaagttgaaccacttggtcgacgacaagatgcatgcccgt
tcgaccggtccgtactcgctcgttacccagcagccgctgggcggcaaggcgcagttcggt
ggtcagcgcttcggtgaaatggaagtctgggcactggaagcctacggcgcggcctacacc
ctgcaggaaatgctgacggtgaagtccgatgacgtacagggccgtaaccagatgtacaag
aacatcgtcgacggtgagcacgagatggttgcgggcatgccggaatccttcaacgttttg
gtgaaggaaatccgctcgctggccatcaacatggaactggaaggcggttga
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integrated database retrieval system
