Stella sp. ATCC 35155: STAQ_19630
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Entry
STAQ_19630 CDS
T07954
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stel
Stella sp. ATCC 35155
Pathway
stel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAQ_19630 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stel03019
]
STAQ_19630 (rnr)
03016 Transfer RNA biogenesis [BR:
stel03016
]
STAQ_19630 (rnr)
Enzymes [BR:
stel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
STAQ_19630 (rnr)
Messenger RNA biogenesis [BR:
stel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STAQ_19630 (rnr)
Transfer RNA biogenesis [BR:
stel03016
]
Prokaryotic type
tRNA degradation factors
STAQ_19630 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BBK36885
LinkDB
All DBs
Position
complement(2100796..2103045)
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AA seq
749 aa
AA seq
DB search
MARRRDREQVTFPDRDAIVAFIRSSPTAVGKREIARHFELGIEHRGALKALLRELEDTGT
VERGPGRRLGPRDALPEVTMLVVTDIDPDGELLARPVGARGDEPGAPRIFMQPERRGTPA
IAVGTRLLARLSRTAPDEYQARPIRIMEGDAGRVVGVFMTDARLRGGGFAGRIVPTDRRH
KTEYRVAMTDAGGAEPGELVVGDILPRSRMGLPQAAVIDRLGDMANPRTFSLVAIHTHGI
PTEFPDAAVAEAEAARPVSLDGREDLRDLPLVTIDGADARDFDDAVWAEAAADGGWNAVV
AIADVAHYVRPGSALDAEARRRGNSVYFPDRVVPMLPEALSNDLCSLRPDEPRACLAVRL
RIDAEGRLTGHRFVRALMRSAARLTYDQVQAAADGRPDEATGPLLEPVIRPLYGVFGALL
KARAQRGTLDLDLPERQVILGPDGHIDRVVPRRRYDSHRLIEELMIAANVAAAEAATGRQ
MPCLYRIHDAPDPAKVEALRPVLESLGLRLARGQVLKPRHFNDIITRVEGTPHAPMVHDL
VLRSQSQAQYRPENIGHFGLALRRYAHFTSPIRRYADLVVHRALIAAFGLGDGAERQETG
ALDALGEHLGQTERRAAVAERESVDRYTAAYLSERVGSEVSGRIAGVTRFGLFVRLEETG
ADGLVPVSTLPTDFYDHDEKAHALVGRRWGRVYRLGESVRVRIVEADPATGGLVLALLDP
EDRWSPGIVAARASRPGPTRRTPRARKPR
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
ttggcccgtcgccgggaccgcgagcaggtcaccttccccgaccgcgacgcgatcgtcgcg
ttcatccggtcgagcccgacggccgtcggcaagcgcgagatcgcccgccatttcgagctc
ggcatcgagcatcgcggcgccctcaaggcgctgctccgcgagttggaggacaccggcacc
gtcgaacgcgggccgggccgccgtctcgggccccgagacgcgctgcccgaggtgacgatg
ctcgtcgtcaccgacatcgacccggacggcgaactgctggcccgccccgtcggggcgcgc
ggcgacgaacccggcgcaccgcgcatcttcatgcagcccgagcgccgcggcacgccggcc
atcgccgtcggcacccgcctcctcgcccgcctcagccgcaccgcgcccgacgagtaccaa
gcgcgcccgatccgtatcatggagggcgatgccggccgcgtcgtcggcgtcttcatgacc
gacgcccgcctccgcggcggcggcttcgccggccgcatcgtaccgaccgaccggcgacac
aagacggaatatcgcgtcgccatgacggacgccggcggcgccgagccgggcgaactcgtc
gtcggcgacatcctgccgcgcagccgcatgggcctgccgcaggcggccgtcatcgaccgc
ctgggcgacatggcgaacccgcgcaccttcagcctcgtcgccatccacacccacggcatc
ccgaccgagtttccggacgccgccgtcgcggaggcggaggccgccaggcccgtctccctc
gacggccgggaggatctgcgcgacctgccgctggtcaccatcgacggcgccgacgcccgc
gacttcgacgatgccgtgtgggccgaggccgccgcggacggcggctggaacgccgtcgtc
gccatcgccgacgtcgcgcactatgtccgccccggcagcgcactggacgccgaggcgcgg
cgccgcggcaattccgtctatttccccgaccgcgtcgtgccgatgctgccggaggcgctg
tccaacgacctctgctcgctgcgccccgacgagccgcgcgcatgcttggcggtgcgcctc
cggatcgatgccgaaggccgcctgaccggccaccgcttcgtccgcgcgctgatgcgctcg
gccgcccgcctgacctacgaccaggtgcaggccgccgcggacggccggcccgacgaggcg
accgggccgctgctggagccggtgatccgccccctctacggcgtcttcggcgcattgctg
aaggcgcgggcccagcgcggcacgctcgacctcgacctgccggagcgccaggtgatcctc
gggcccgatggccatatcgaccgggtcgtgccgcggcggcgctacgacagccaccggctg
atcgaggaactgatgattgccgccaacgtcgctgcggccgaggcggcgaccggtcggcag
atgccctgcctctaccgcatccacgacgcccccgatccggccaaggtcgaggcgctgcgc
ccggtgctggaaagcctcggcctgcgtctcgcacgcgggcaggttctgaagccgcgccac
ttcaacgacatcatcacccgcgtcgagggcaccccccacgcgccgatggtccacgacctc
gtcctgcgcagccagtcgcaggcacagtatcggcccgagaacatcggccatttcgggctg
gcgctgcggcgctatgcccatttcacctcgccgatccgccgctatgccgacctcgtggtc
catcgcgccctgatcgccgcgttcgggctcggcgacggagccgaacgccaggagacgggt
gccctcgatgcgctgggcgagcatctcggccagaccgagcggcgcgcggcggtggccgag
cgcgagtcggtcgaccgctacacggccgcctacctgtccgagcgcgtcggcagcgaagtc
tccggccggattgccggggtcacccggttcggcctcttcgtgcgcctcgaggagaccggc
gccgacggcctcgtccccgtcagcacgctgccgaccgacttctatgaccatgacgagaag
gcgcatgccctggtcggtcgccgctggggccgcgtctatcggctgggcgaatccgtgcgc
gtgcggatcgtcgaggcggatccggcgaccggcggcctcgtcctggcattgctcgacccc
gaggaccgctggtccccgggcatcgtcgccgcccgcgcgagtcgccccgggccgacgcgc
cgcacgccccgggcacgcaagccgcggtga
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