Stella sp. ATCC 35155: STAQ_30540
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Entry
STAQ_30540 CDS
T07954
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
stel
Stella sp. ATCC 35155
Brite
KEGG Orthology (KO) [BR:
stel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stel03019
]
STAQ_30540 (hrpB)
Enzymes [BR:
stel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
STAQ_30540 (hrpB)
Messenger RNA biogenesis [BR:
stel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STAQ_30540 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_30
HA2_N
nSTAND3
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BBK37976
LinkDB
All DBs
Position
3224322..3226784
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AA seq
820 aa
AA seq
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MLELPVQAALPAIAVALEHNRAVVLRAPPGAGKTTALPPALLPAPWRGDGRILMLEPRRL
AARSAASRIAANLGEPVGATVGYRVRLDSRVGPATRIEVVTEGIFLRRIQGDPELEGVAA
VLFDEFHERSVDIDLALALTLEARAALRPNLRLVVMSATLDPAPLLDLLPDAVAIEAEGR
MFPVSVHHAERPANEVAAELRAADAARRALARDSGDVLVFLPGMAEIRRAERRLRETIDD
PAVDIEPLHGDLAAADQDRAIAPSRPGRRKVVLATAIAETSLTIEGVRTVIDSGLRRAAR
FDPRTGMSRLVTVPVSAAAAEQRRGRAGRVAPGRCERLWTEAEHRALPAFDPAEIRSADL
APMALELAVWGIADPCALSWLDPPPAAALEQAWSLLTRLGALDGERRPTAIGRRMARIGV
HPRLARMIVGAATPADAWNGCRIAALLSERDPLAGRGDADLRTRLEGAPHGAFQRIRTLA
RDLARAAGVAAQPGPATQGAGALLALAYPDRLARRADPRGLYRMTGGGAAALPEGDALLV
EEWLAIAALDGDRQRARIYLAAPIALAEIEELFADQIQSVERTEWDSRSRSVVSRRERRL
DRLVLEDLPQPRPDPDALAAAMLAGIRELGLAILPWSAEARQLQARVGLMRRMDGPEAWP
DLSDAALTADLEVWLAPHLGRATQPAHLARLDVAGLLADRLDWPARRRLDAEASTHLTVP
SGSRIALDYAQGDQPVLAVRLQEMFGQRTSPTVAGGRVPVLVHLLSPAGRPVQVTQDLAG
FWDRGYREVRADLRGRYPRHHWPEDPRDATPTRRVKPRGT
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacttcccgtccaggcggccctgccggcgatcgcggtggcgctggagcacaat
cgcgccgtcgtgctgcgcgccccgcccggcgccggtaagaccaccgcactgccgcccgcc
ctgctgcccgccccctggcgcggcgacggccgcatcctgatgctggagccgcgtcgcctc
gccgcccgctcggccgcgagccggatcgccgccaacctgggggaaccggtcggcgcgacg
gtcggctaccgcgtccggctggacagccgggtcggtcccgccacccggatcgaggtggtt
accgagggcatcttcctccgccgtatccagggcgacccggaactggagggggtcgccgct
gtcctcttcgacgagttccacgagcgcagcgtcgacatcgacctggccctggcgctgacg
ctggaggcacgcgcagcccttcgccccaacctcaggctggtcgtgatgtcggcgacgctc
gacccggcgcccctgctcgatctccttcccgacgcggtggcgatcgaggcggagggccgg
atgttcccggtctccgtgcatcacgccgagcggcccgcgaacgaggtcgccgccgaactg
cgcgccgccgacgccgcccgccgcgcactggcccgggactccggggacgtgctggtgttc
ctgcccggcatggccgagatccggcgggcggagcgccgactgcgcgagacgatcgacgat
cctgcggtcgatatcgagccgctccacggcgacctcgccgccgccgaccaggatcgggcg
atcgccccttcgcgacccggccgccgcaaggtcgtgctggcgacggcaatcgccgagacc
agcctgaccatcgagggcgtgcgcacggtcatcgattccggtctgcggcgcgcggcacgc
ttcgatccgcgcaccggcatgtcgcgcctcgtgaccgtgcccgtgtccgccgcggcggca
gaacagcgccgcggccgcgccggccgtgtcgcgcccggacggtgcgagcggctgtggacg
gaagccgagcatcgcgccctgccggccttcgacccggccgagatccgctcggccgacctc
gcgccgatggcgctcgaactggccgtctggggcatcgccgacccctgcgccctctcctgg
ctcgatccgccgccggcggccgcgctggaacaggcctggagcctgctgacccggctcggc
gcactcgacggcgaacgtcggccgaccgcgatcggacgccggatggcgcgcatcggcgtc
catccccggctcgcccgcatgatcgtcggcgccgccaccccggccgatgcctggaacggc
tgccgcatcgccgccctgctgtccgagcgcgacccgctggccggccgcggcgatgccgat
ctgcggacccggctggagggggcgccgcacggcgccttccagcgcatccggacgctggcc
cgcgacctcgcgcgcgcggccggcgtggcggcccaaccgggccccgccacccagggcgcc
ggcgcgctgctggcgctggcatatcccgaccgactggcgcgccgcgccgatccgcgcggc
ctctatcgcatgacgggcggcggcgcggcggcgctgccagagggcgacgcgctgctggtc
gaggaatggctcgccatcgccgccctcgacggcgaccgccagcgcgcgcggatctatctc
gccgccccgatcgcccttgccgagatcgaggaactcttcgccgaccagatccagtccgtc
gagcggaccgaatgggacagccgcagccgcagcgtcgtctcgcgccgcgagcgccgcctc
gaccggctggtgctggaggatctgccgcagccccggccggacccggacgcgctggcggcc
gcgatgctggcggggatccgggaattggggctcgccatcctgccatggagcgcggaggcg
cggcagttgcaggcccgcgtcggcctgatgcggcgcatggacgggcccgaagcctggccg
gacctgtccgacgcggccctgaccgccgatctcgaggtctggctggcgccccatctgggc
cgggcgacgcagccggcccacctcgcccggctggatgttgcaggactgctcgccgaccgc
ctcgactggccggcgcggcggcgcctggacgcggaggcgtcgacgcacctgacggttccc
tcgggctcgcgcatcgcgctcgactacgcccagggcgaccagccggtgctggcggtccgc
ctgcaggagatgttcggccagcggacctcgcccaccgtcgccggcggccgcgtgccggtg
ctggtccacctgctgtcgccggccgggcgcccggtgcaggtgacccaggatctggcgggc
ttctgggatcgcggctatcgcgaggtgcgggccgacctgcgcggccgctatccgcggcac
cactggccggaagacccgcgcgacgcgacgccgacccggcgcgtcaagccacgcgggaca
tag
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